Browse Element(s) Details


Os.40139.1.A1_x_at

Description gb:CF331001
DB_XREF= gi:33810220
DB_XREF=NACL--06-P04.g1
CLONE=NACL--06-P04
TID=Os.40139.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.40139 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g152703/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g15200Os.43777.1.S1_at9/111+8517789..8518356hypothetical protein
LOC_Os01g15210NANA1+8519598..8520992hypothetical protein
LOC_Os01g15220OsAffx.22222.3.S1_x_at11/111+8521973..8522956expressed protein
LOC_Os01g15220OsAffx.22222.3.S1_at11/111+8521973..8522956expressed protein
LOC_Os01g15229OsAffx.22222.1.S1_x_at11/111+8524356..8525156hypothetical protein
LOC_Os01g15240NANA1+8529014..8529721hypothetical protein
LOC_Os01g15250OsAffx.23257.1.S1_at11/111+8532477..8533844expressed protein
LOC_Os01g15260OsAffx.27867.1.S1_s_at11/111+8537445..8541331Dynein light chain 1, cytoplasmic, putative, expressed
LOC_Os01g15260Os.10666.1.S1_at9/111+8537445..8541331Dynein light chain 1, cytoplasmic, putative, expressed
LOC_Os01g15270Os.37869.2.S1_a_at11/111+8542802..8543674expressed protein
LOC_Os01g15270Os.40139.1.A1_x_at3/111+8542802..8543674expressed protein
LOC_Os01g15280Os.20602.2.S1_x_at11/111+8547101..8549448hAT family dimerisation domain containing protein, expressed
LOC_Os01g15290Os.51824.1.S1_at10/111+8552091..855394850S ribosomal protein L18, putative, expressed
LOC_Os01g15300Os.49825.1.S1_at11/111+8557427..8566431zinc finger helicase family protein, putative, expressed
LOC_Os01g15300Os.197.2.S1_x_at11/111+8557427..8566431zinc finger helicase family protein, putative, expressed
LOC_Os01g15310Os.197.1.S1_a_at9/111+8567682..8571357U6 snRNA-associated Sm-like protein LSm4, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40139.1.A1_x_at--375--4311NONE
CCTTTCATGTAACAGCGAGCAGGGC
NONE
Os.40139.1.A1_x_at--1063--3671NONE
CTTTCATGTAACAGCGAGCAGGGCC
NONE
Os.40139.1.A1_x_at--478--5931NONE
GAGCAGGGCCTCACTTTACAACAAC
NONE
Os.40139.1.A1_x_at--521--1531NONE
AGCAGGGCCTCACTTTACAACAACG
NONE
Os.40139.1.A1_x_at--1034--5011NONE
GCAGGGCCTCACTTTACAACAACGG
NONE
Os.40139.1.A1_x_at--896--3451NONE
CAGGGCCTCACTTTACAACAACGGT
NONE
Os.40139.1.A1_x_at--496--6831Chr01:8542915..8543059 (25 bp)
GTTTCCCCACGTACCCGAGTGTGAT
LOC_Os01g15270
Os.40139.1.A1_x_at--101--10271Chr01:8542914..8543058 (25 bp)
TTTCCCCACGTACCCGAGTGTGATG
LOC_Os01g15270
Os.40139.1.A1_x_at--778--10651NONE
TTCCCCACGTACCCGAGTGTGATGG
NONE
Os.40139.1.A1_x_at--223--4211NONE
CCCCACGTACCCGAGTGTGATGGTT
NONE
Os.40139.1.A1_x_at--565--4151Chr01:8542910..8542933 (24 bp)
CCCACGTACCCGAGTGTGATGGTTT
LOC_Os01g15270
Target Sequence 
CCTTTCATGTAACAGCGAGCAGGGCCTCACTTTACAACAACGGTTTTTGTTTTTTAACTTTCCCGGTTTCCCCACGTACC
CGAGTGTGATGGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40139.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis