Browse Element(s) Details


Os.197.1.S1_a_at

Description gb:AK100819.1
DB_XREF= gi:32986028
TID=Os.197.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.197 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023122F24, full insert sequence.
FL= gb:AK100819.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g153109/11U6 snRNA-associated Sm-like protein LSm4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g15270Os.37869.2.S1_a_at11/111+8542802..8543674expressed protein
LOC_Os01g15270Os.40139.1.A1_x_at3/111+8542802..8543674expressed protein
LOC_Os01g15280Os.20602.2.S1_x_at11/111+8547101..8549448hAT family dimerisation domain containing protein, expressed
LOC_Os01g15290Os.51824.1.S1_at10/111+8552091..855394850S ribosomal protein L18, putative, expressed
LOC_Os01g15300Os.49825.1.S1_at11/111+8557427..8566431zinc finger helicase family protein, putative, expressed
LOC_Os01g15300Os.197.2.S1_x_at11/111+8557427..8566431zinc finger helicase family protein, putative, expressed
LOC_Os01g15310Os.197.1.S1_a_at9/111+8567682..8571357U6 snRNA-associated Sm-like protein LSm4, putative, expressed
LOC_Os01g15320Os.10662.1.S1_at11/111+8574045..8574725Rapid ALkalinization Factor family protein, expressed
LOC_Os01g15330OsAffx.22218.1.S1_at11/111+8581619..8582171hypothetical protein
LOC_Os01g15340Os.487.1.S1_at11/111+8582959..8583743FPF1 protein, putative, expressed
LOC_Os01g15350Os.9029.2.S1_x_at11/111+8590594..8596216Zinc finger CCCH type domain containing protein ZFN-like 3, putative, expressed
LOC_Os01g15350Os.9029.1.S1_at11/111+8590594..8596216Zinc finger CCCH type domain containing protein ZFN-like 3, putative, expressed
LOC_Os01g15350Os.9029.1.S1_a_at11/111+8590594..8596216Zinc finger CCCH type domain containing protein ZFN-like 3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005732cellular_componentsmall nucleolar ribonucleoprotein complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.197.1.S1_a_at--337--591Chr01:8570458..8570482 (25 bp)
ATGCCAGAATGTTACATCCGTGGGA
LOC_Os01g15310
Os.197.1.S1_a_at--288--8791Chr01:8570449..8570473 (25 bp)
TGTTACATCCGTGGGAACACCATCA
LOC_Os01g15310
Os.197.1.S1_a_at--1148--7471Chr01:8570439..8570463 (25 bp)
GTGGGAACACCATCAAGTATCTTCG
LOC_Os01g15310
Os.197.1.S1_a_at--359--5991NONE
GAGACTTCAAAGAGCAGATCAGATA
NONE
Os.197.1.S1_a_at--181--6451Chr01:8568197..8568218 (22 bp)
GATCAGATAGGAGGCCACCAGGTGT
LOC_Os01g15310
Os.197.1.S1_a_at--898--231Chr01:8568149..8568173 (25 bp)
ATATAGGTACTAAGCCTGGAGGCAG
LOC_Os01g15310
Os.197.1.S1_a_at--598--5071Chr01:8567752..8567776 (25 bp)
GCAGCGGTTGGCCTGTCTCGAAACA
LOC_Os01g15310
Os.197.1.S1_a_at--1107--8451Chr01:8567744..8567768 (25 bp)
TGGCCTGTCTCGAAACAATTTGTTT
LOC_Os01g15310
Os.197.1.S1_a_at--968--3171Chr01:8567729..8567753 (25 bp)
CAATTTGTTTGATGTCTGGACCCTC
LOC_Os01g15310
Os.197.1.S1_a_at--36--751Chr01:8567718..8567742 (25 bp)
ATGTCTGGACCCTCGACTATATTGA
LOC_Os01g15310
Os.197.1.S1_a_at--1061--6791Chr01:8567682..8567706 (25 bp)
GTTATTACTTTGACCTGTTCATCGC
NONE
Target Sequence 
ATGCCAGAATGTTACATCCGTGGGAACACCATCAAGTATCTTCGGGTTCCTGATGAGGTGATTGACAAGGTCCAGGAAGA
GACTTCAAAGAGCAGATCAGATAGGAGGCCACCAGGTGTAGGCCGCGGAAGAGGAAGAGGTGATATAGGTACTAAGCCTG
GAGGCAGAGGCATTGGGCGTGGCCAGGATGATGGTGGCAGCAAAGGCGGTGGTGNCCGTGGAAGGGGAGGAATTGGAGGT
AAAGGTGGCATCAAAGGTGGGGGCCGCGGACGTGGGTGAGAGGGAAGGTCACTTGTGGGAATGCCGCTTTTTTNAAGGCT
TTGTGTCACATAGATTGCTTTAGGAGGGTGAAGAATGGACTGGTGGAGTAAGCATTGCTTTGCTTTATCATTTTGTGGTA
TGACCGAAAAATGTTTCATGGGTTCAGTAGTTACCAGTGAAGAGGCAGCGGTTGGCCTGTCTCGAAACAATTTGTTTGAT
GTCTGGACCCTCGACTATATTGAATATTATTGTGGTTATTACTTTGACCTGTTCATCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.197.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis