Browse Element(s) Details


Os.9029.1.S1_a_at

Description gb:AK073920.1
DB_XREF= gi:32983943
TID=Os.9029.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9029 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative zinc finger protein (P0462H08.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033073E09, full insert sequence.
FL= gb:AK073920.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1535011/11Zinc finger CCCH type domain containing protein ZFN-like 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g15300Os.49825.1.S1_at11/111+8557427..8566431zinc finger helicase family protein, putative, expressed
LOC_Os01g15300Os.197.2.S1_x_at11/111+8557427..8566431zinc finger helicase family protein, putative, expressed
LOC_Os01g15310Os.197.1.S1_a_at9/111+8567682..8571357U6 snRNA-associated Sm-like protein LSm4, putative, expressed
LOC_Os01g15320Os.10662.1.S1_at11/111+8574045..8574725Rapid ALkalinization Factor family protein, expressed
LOC_Os01g15330OsAffx.22218.1.S1_at11/111+8581619..8582171hypothetical protein
LOC_Os01g15340Os.487.1.S1_at11/111+8582959..8583743FPF1 protein, putative, expressed
LOC_Os01g15350Os.9029.2.S1_x_at11/111+8590594..8596216Zinc finger CCCH type domain containing protein ZFN-like 3, putative, expressed
LOC_Os01g15350Os.9029.1.S1_at11/111+8590594..8596216Zinc finger CCCH type domain containing protein ZFN-like 3, putative, expressed
LOC_Os01g15350Os.9029.1.S1_a_at11/111+8590594..8596216Zinc finger CCCH type domain containing protein ZFN-like 3, putative, expressed
LOC_Os01g15360Os.51348.1.S1_x_at2/111+8600953..8603870retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g15370NANA1+8609474..8612269retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g15380Os.43764.1.A1_at5/111+8615716..8618007hAT family dimerisation domain containing protein
LOC_Os01g15380OsAffx.24046.2.S1_x_at3/111+8615716..8618007hAT family dimerisation domain containing protein
LOC_Os01g15380OsAffx.24046.7.S1_x_at3/111+8615716..8618007hAT family dimerisation domain containing protein
LOC_Os01g15380OsAffx.24046.3.S1_x_at1/111+8615716..8618007hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0003677molecular_functionDNA binding
GO:0004518molecular_functionnuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9029.1.S1_a_at--8--10631Chr01:8591118..8591142 (25 bp)
TTCGACTTACCCTCTCAGCATCAGT
LOC_Os01g15350
Os.9029.1.S1_a_at--567--10471Chr01:8591112..8591136 (25 bp)
TTACCCTCTCAGCATCAGTTCACTT
LOC_Os01g15350
Os.9029.1.S1_a_at--527--4291Chr01:8591108..8591132 (25 bp)
CCTCTCAGCATCAGTTCACTTGGAC
LOC_Os01g15350
Os.9029.1.S1_a_at--348--9531Chr01:8591106..8591130 (25 bp)
TCTCAGCATCAGTTCACTTGGACCC
LOC_Os01g15350
Os.9029.1.S1_a_at--612--8531Chr01:8591088..8591112 (25 bp)
TGGACCCCCACTCATTGTGAATAAG
LOC_Os01g15350
Os.9029.1.S1_a_at--690--7331Chr01:8591072..8591096 (25 bp)
GTGAATAAGGCTTCAACTGACTTTG
LOC_Os01g15350
Os.9029.1.S1_a_at--811--9771Chr01:8591067..8591091 (25 bp)
TAAGGCTTCAACTGACTTTGACAAA
LOC_Os01g15350
Os.9029.1.S1_a_at--774--8291Chr01:8591064..8591088 (25 bp)
GGCTTCAACTGACTTTGACAAAGGC
LOC_Os01g15350
Os.9029.1.S1_a_at--899--8251Chr01:8591042..8591066 (25 bp)
GGCATGGCCAAGGTGGTAATCTTGC
LOC_Os01g15350
Os.9029.1.S1_a_at--856--871Chr01:8591039..8591063 (25 bp)
ATGGCCAAGGTGGTAATCTTGCCAC
LOC_Os01g15350
Os.9029.1.S1_a_at--950--3211Chr01:8591034..8591058 (25 bp)
CAAGGTGGTAATCTTGCCACCTGAA
LOC_Os01g15350
Target Sequence 
TTCGACTTACCCTCTCAGCATCAGTTCACTTGGACCCCCACTCATTGTGAATAAGGCTTCAACTGACTTTGACAAAGGCA
TGGCCAAGGTGGTAATCTTGCCACCTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9029.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis