Browse Element(s) Details


Os.487.1.S1_at

Description gb:AK070626.1
DB_XREF= gi:32980650
TID=Os.487.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.487 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0462H08.5 (P0462H08.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023056F13, full insert sequence.
FL= gb:AK070626.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1534011/11FPF1 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g15300Os.49825.1.S1_at11/111+8557427..8566431zinc finger helicase family protein, putative, expressed
LOC_Os01g15300Os.197.2.S1_x_at11/111+8557427..8566431zinc finger helicase family protein, putative, expressed
LOC_Os01g15310Os.197.1.S1_a_at9/111+8567682..8571357U6 snRNA-associated Sm-like protein LSm4, putative, expressed
LOC_Os01g15320Os.10662.1.S1_at11/111+8574045..8574725Rapid ALkalinization Factor family protein, expressed
LOC_Os01g15330OsAffx.22218.1.S1_at11/111+8581619..8582171hypothetical protein
LOC_Os01g15340Os.487.1.S1_at11/111+8582959..8583743FPF1 protein, putative, expressed
LOC_Os01g15350Os.9029.2.S1_x_at11/111+8590594..8596216Zinc finger CCCH type domain containing protein ZFN-like 3, putative, expressed
LOC_Os01g15350Os.9029.1.S1_at11/111+8590594..8596216Zinc finger CCCH type domain containing protein ZFN-like 3, putative, expressed
LOC_Os01g15350Os.9029.1.S1_a_at11/111+8590594..8596216Zinc finger CCCH type domain containing protein ZFN-like 3, putative, expressed
LOC_Os01g15360Os.51348.1.S1_x_at2/111+8600953..8603870retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009739biological_processresponse to gibberellic acid stimulus
GO:0009911biological_processpositive regulation of flower development
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.487.1.S1_at--979--7191Chr01:8583309..8583333 (25 bp)
GTCGTCGACGCCTAAATTGACCTAT
LOC_Os01g15340
Os.487.1.S1_at--747--10111Chr01:8583287..8583311 (25 bp)
TATGTATAGGCTCGCATGCATGCAA
LOC_Os01g15340
Os.487.1.S1_at--952--4971Chr01:8583270..8583294 (25 bp)
GCATGCAAGGTAGACGACCATCCAC
LOC_Os01g15340
Os.487.1.S1_at--376--5851Chr01:8583255..8583279 (25 bp)
GACCATCCACCTTGCATGCATGCAG
LOC_Os01g15340
Os.487.1.S1_at--157--651Chr01:8583240..8583264 (25 bp)
ATGCATGCAGGCTATCATTCTCTCT
LOC_Os01g15340
Os.487.1.S1_at--953--3551Chr01:8583195..8583219 (25 bp)
CATCTTTGTTGTGGTGTGTGTGAAT
LOC_Os01g15340
Os.487.1.S1_at--700--6891Chr01:8583106..8583130 (25 bp)
GTATACATATGTGTCGTCGCTGATC
LOC_Os01g15340
Os.487.1.S1_at--171--7231Chr01:8583091..8583115 (25 bp)
GTCGCTGATCGATTTGGTTTATTAC
LOC_Os01g15340
Os.487.1.S1_at--1117--10151Chr01:8583047..8583071 (25 bp)
TATCAGCAGTGTGTTATATCAATTG
LOC_Os01g15340
Os.487.1.S1_at--1143--3171Chr01:8583028..8583052 (25 bp)
CAATTGCTTACTTGTATGTGTATCA
LOC_Os01g15340
Os.487.1.S1_at--485--7391Chr01:8582994..8583018 (25 bp)
GTGAGTGTGGCTGATGCATATATAT
LOC_Os01g15340
Target Sequence 
GTCGTCGACGCCTAAATTGACCTATGTATAGGCTCGCATGCATGCAAGGTAGACGACCATCCACCTTGCATGCATGCAGG
CTATCATTCTCTCTTCGTCTCCGTCTTCGTCTTTCATCTTTGTTGTGGTGTGTGTGAATTTATTATACTTCTTATGANTG
TGTGTGTGACTGTGTGAGAGTTCATGGAGAGTGATGAGTAGTGGTATACATATGTGTCGTCGCTGATCGATTTGGTTTAT
TACCTTGTGGGTGGGTATTAATTATCAGCAGTGTGTTATATCAATTGCTTACTTGTATGTGTATCATGTACATGAGTGAG
TGTGGCTGATGCATATATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.487.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis