Browse Element(s) Details


Os.51348.1.S1_x_at

Description gb:AK062610.1
DB_XREF= gi:32972628
TID=Os.51348.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51348 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-116-A12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-105-A07, full insert sequence.
FL= gb:AK062610.1 gb:AK105276.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2421011/11expressed protein
LOC_Os09g015203/11transposon protein, putative, unclassified
LOC_Os05g199303/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g427703/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g011102/11expressed protein
LOC_Os06g335492/11Protein phosphatase 2C containing protein, expressed
LOC_Os02g260142/11Terpene synthase, N-terminal domain containing protein, expressed
LOC_Os06g181502/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g153602/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g064902/11hypothetical protein
LOC_Os10g121492/11hypothetical protein
LOC_Os05g230702/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g222191/11
LOC_Os06g317201/11hypothetical protein
LOC_Os11g428401/11hypothetical protein
LOC_Os05g265401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g354601/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g354401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g134101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g243101/11retrotransposon protein, putative, unclassified
LOC_Os12g336501/11retrotransposon protein, putative, unclassified
LOC_Os05g274501/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g158301/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g24170NANA2+13994428..13999534retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g24190Os.17669.1.S1_a_at11/112+14001044..14012252Cyclin, N-terminal domain containing protein, expressed
LOC_Os02g24190Os.38764.1.S1_x_at6/112+14001044..14012252Cyclin, N-terminal domain containing protein, expressed
LOC_Os02g24190Os.48015.1.A1_x_at2/112+14001044..14012252Cyclin, N-terminal domain containing protein, expressed
LOC_Os02g24190OsAffx.31813.1.S1_x_at2/112+14001044..14012252Cyclin, N-terminal domain containing protein, expressed
LOC_Os02g24190OsAffx.20877.1.S1_at1/112+14001044..14012252Cyclin, N-terminal domain containing protein, expressed
LOC_Os02g24200OsAffx.24402.1.S1_at11/112+14012162..14012705hypothetical protein
LOC_Os02g24210Os.51348.1.S1_at11/112+14020003..14020667expressed protein
LOC_Os02g24210Os.51348.1.S1_x_at11/112+14020003..14020667expressed protein
LOC_Os02g24220NANA2+14030210..14031590transposon protein, putative, unclassified
LOC_Os02g24230OsAffx.1196.1.S1_at2/112+14036866..14041277Zinc knuckle family protein
LOC_Os02g24230OsAffx.1196.1.S1_x_at1/112+14036866..14041277Zinc knuckle family protein

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Gene Ontology Classification
GO idTypeName
GO:0016106biological_processsesquiterpenoid biosynthesis
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51348.1.S1_x_at--33--8391Chr02:14020080..14020104 (25 bp)
GGCGAGCTCGATCTGCAACCGGCAC
LOC_Os02g24210
Os.51348.1.S1_x_at--426--4831Chr02:14020109..14020133 (25 bp)
GCTACTAGGGCCACCCGATGTTGTC
LOC_Os02g24210
Os.51348.1.S1_x_at--908--3351Chr02:14020120..14020144 (25 bp)
CACCCGATGTTGTCGTCGCTGCTCG
LOC_Os02g24210
Os.51348.1.S1_x_at--40--7231Chr02:14020181..14020205 (25 bp)
GTCGACGTTGTTGCCGCTGCTCGGT
LOC_Os02g24210
Os.51348.1.S1_x_at--727--3771Chr02:14020363..14020387 (25 bp)
CTCTGCCGACGGGTGTCGAAACAAG
LOC_Os02g24210
Os.51348.1.S1_x_at--770--1033341Chr12:5365418..5365442 (25 bp)
TTTAGACAGGTTCAGGCCCTCTCAA
NONE
Os.51348.1.S1_x_at--853--673334Chr12:5365427..5365453 (25 bp)
GTTCAGGCCCTCTCAATGAGGTAAT
NONE
Os.51348.1.S1_x_at--511--6157Chr11:17631125..17631149 (25 bp)
GAGGTAATACCCTACTCTTGTTTGG
NONE
Os.51348.1.S1_x_at--891--4213Chr02:14020514..14020538 (25 bp)
CCGCCGGGTGTGTTATTGATCTGAT
LOC_Os02g24210
Os.51348.1.S1_x_at--979--711Chr02:14020537..14020561 (25 bp)
ATGATCAGGTTGTGTGTCATGCCCC
LOC_Os02g24210
Os.51348.1.S1_x_at--524--427274Chr12:8545955..8545979 (25 bp)
CCTCCTGCCCACCTTATATAGGATG
NONE
Target Sequence 
GGCGAGCTCGATCTGCAACCGGCACCGTCGCTACTAGGGCCACCCGATGTTGTCGTCGCTGCTCGGGCCGTCCCTCCACC
CGGCGCCTCCGTCGGGACGGGGTCGACGTTGTTGCCGCTGCTCGGTACGGGGGGCGCCAGATCTGAGTGCTGGTAGGAGA
GGAGGCGGCGGGGTCGTCGCCGCTGCATGCCGCCGGTGGGAGGAGAGGAGGGGGCGGGGGCTGGGGGGTCGTCGCCGTGT
GCCGCCTCGTCGTCCCAGCGCCGGCGCTGCCCTCGCCGCCGCGCTCTGCCGACGGGTGTCGAAACAAGAATTCGGCAATA
ATAAAAGGGGGTAGCGCATGAGACCTAAAAGTGGATGGGTGCGGAGACAAGGATTTAGACAGGTTCAGGCCCTCTCAATG
AGGTAATACCCTACTCTTGTTTGGGGATTTGAATCCGCCGGGTGTGTTATTGATCTGATGATCAGGTTGTGTGTCATGCC
CCCTAGAGGGCCTCCTGCCCACCTTATATAGGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51348.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis