Browse Element(s) Details


OsAffx.1196.1.S1_x_at

Description gb:NM_189146.1
DB_XREF= gi:34905375
GEN=OJ1126_G08.18
TID=OsAffx.1196.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OJ1126_G08.18 (OJ1126_G08.18), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g312902/11hypothetical protein
LOC_Os12g170401/11transposon protein, putative, unclassified
LOC_Os04g130801/11hypothetical protein
LOC_Os07g223301/11hypothetical protein
LOC_Os06g251701/11Transposable element protein, putative, Retrotrans_gag
LOC_Os01g295071/11hypothetical protein
LOC_Os04g100801/11hypothetical protein
LOC_Os05g225301/11hypothetical protein
LOC_Os06g252101/11Zinc knuckle family protein
LOC_Os02g242301/11Zinc knuckle family protein
LOC_Os02g246901/11hypothetical protein
LOC_Os01g407801/11hypothetical protein
LOC_Os09g063001/11hypothetical protein
LOC_Os06g274301/11hypothetical protein
LOC_Os11g260101/11hypothetical protein
LOC_Os08g220801/11hypothetical protein
LOC_Os09g041401/11hypothetical protein
LOC_Os12g335001/11hypothetical protein
LOC_Os01g363101/11hypothetical protein
LOC_Os06g274101/11hypothetical protein
LOC_Os06g161001/11Zinc knuckle family protein
LOC_Os06g284501/11retrotransposon protein, putative, unclassified
LOC_Os12g199901/11hypothetical protein
LOC_Os11g088891/11hypothetical protein
LOC_Os05g282401/11hypothetical protein
LOC_Os05g181801/11hypothetical protein
LOC_Os11g087291/11hypothetical protein
LOC_Os07g150601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g31250NANA1+17418308..17419549retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g31260NANA1+17420345..17423747retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g31270OsAffx.21980.2.S1_s_at11/111+17432370..17437076Annexin-like protein RJ4, putative
LOC_Os01g31270OsAffx.21980.2.S1_at10/111+17432370..17437076Annexin-like protein RJ4, putative
LOC_Os01g31270OsAffx.21980.1.S1_at10/111+17432370..17437076Annexin-like protein RJ4, putative
LOC_Os01g31270OsAffx.11264.1.S1_at7/111+17432370..17437076Annexin-like protein RJ4, putative
LOC_Os01g31280OsAffx.11264.1.S1_s_at11/111+17439546..17440105hypothetical protein
LOC_Os01g31280OsAffx.11264.1.S1_at1/111+17439546..17440105hypothetical protein
LOC_Os01g31290OsAffx.1196.1.S1_at2/111+17442914..17443447hypothetical protein
LOC_Os01g31290OsAffx.1196.1.S1_x_at2/111+17442914..17443447hypothetical protein
LOC_Os01g31300OsAffx.25367.1.S1_at1/111+17447916..17449938retrotransposon, putative, centromere-specific
LOC_Os01g31300Os.54774.1.S1_at1/111+17447916..17449938retrotransposon, putative, centromere-specific
LOC_Os01g31300Os.54774.1.S1_x_at1/111+17447916..17449938retrotransposon, putative, centromere-specific
LOC_Os01g31310NANA1+17462535..17463156hypothetical protein
LOC_Os01g31320NANA1+17463793..17464293Transposable element protein, putative, Retrotrans_gag
LOC_Os01g31330NANA1+17466169..17466903hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1196.1.S1_x_at--1061--4391Chr01:17442540..17442675 (25 bp)
GCCACTAGGCTGCAGTTCCTGGAGA
NONE
OsAffx.1196.1.S1_x_at--589--371Chr01:17442693..17442717 (25 bp)
ATCAAGGGCGTCAATCTCGATGCCG
NONE
OsAffx.1196.1.S1_x_at--1094--2871Chr01:17442696..17442720 (25 bp)
AAGGGCGTCAATCTCGATGCCGTCA
NONE
OsAffx.1196.1.S1_x_at--576--591Chr01:17442712..17442736 (25 bp)
ATGCCGTCAGGCTGAGACTGTTCCT
NONE
OsAffx.1196.1.S1_x_at--1071--9812Chr05:12715289..12715309 (21 bp)
TACACCAACCGTGTTGCTGTCAACA
LOC_Os05g22530
OsAffx.1196.1.S1_x_at--213--2251Chr01:17442847..17442871 (25 bp)
AAATCAATGCCCTGCGTGGACGAAT
NONE
OsAffx.1196.1.S1_x_at--172--811Chr01:17442914..17442938 (25 bp)
ATGGGAACGACTGCAAGAGTATGGT
NONE
OsAffx.1196.1.S1_x_at--845--2591Chr01:17442919..17442943 (25 bp)
AACGACTGCAAGAGTATGGTTGGAA
LOC_Os01g31290
OsAffx.1196.1.S1_x_at--747--8153Chr12:10661953..10661972 (20 bp)
GGAAAACCATAGAGGAATCTCGTGC
NONE
OsAffx.1196.1.S1_x_at--93--40134Chr12:20207799..20207974 (25 bp)
CGTGCAGATGTCAAGTGGTGTGCCT
LOC_Os12g33500
OsAffx.1196.1.S1_x_at--544--6051Chr01:17443495..17443519 (25 bp)
GAGTTCTTCCCGTTGGGACTTGAGT
NONE
Target Sequence 
GCCACTAGGCTGCAGTTCCTGGAGATCTGTAGCACGTACACCATCAAGGGCGTCAATCTCGATGCCGTCAGGCTGAGACT
GTTCCTGTTCTCCCTCCTCGGGAGAGCGAAGCAGTGGTTCTACACCAACCGTGTTGCTGTCAACACCTGGGACAAATGCT
CTACGGCATTCCTCTCAAAATTCTTCCCGATGGGCAAAATCAATGCCCTGCGTGGACGAATTTCAAGTTTCCAGCAAACA
AGGGACGAGTCCATTCCTGAAGCATGGGAACGACTGCAAGAGTATGGTTGGAAAACCATAGAGGAATCTCGTGCAGGTGG
AACATACAGAGAGACGCGCAACATGACAAGGAATGAACGAGAAAGTTCATCATCCTCGACACCCGTGCAGATGTCAAGTG
GTGTGCCTCCATCTCCAAGTGAATGGCGCTCGAGTTCTTCCCGTTGGGACTTGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1196.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis