Browse Element(s) Details


OsAffx.25367.1.S1_at

Description tigr:9631.m03407
TID=OsAffx.25367.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g356509/11retrotransposon, putative, centromere-specific
LOC_Os06g293202/11retrotransposon, putative, centromere-specific
LOC_Os07g135602/11retrotransposon protein, putative, unclassified
LOC_Os11g226801/11retrotransposon, putative, centromere-specific
LOC_Os02g182301/11retrotransposon, putative, centromere-specific
LOC_Os07g223101/11retrotransposon protein, putative, unclassified
LOC_Os04g178201/11retrotransposon, putative, centromere-specific
LOC_Os11g253901/11retrotransposon, putative, centromere-specific
LOC_Os05g200901/11retrotransposon protein, putative, unclassified
LOC_Os07g220001/11retrotransposon, putative, centromere-specific
LOC_Os02g284801/11retrotransposon, putative, centromere-specific
LOC_Os05g133801/11retrotransposon, putative, centromere-specific
LOC_Os11g223101/11retrotransposon protein, putative, unclassified
LOC_Os11g230601/11retrotransposon, putative, centromere-specific
LOC_Os05g086501/11retrotransposon, putative, centromere-specific
LOC_Os07g206701/11retrotransposon protein, putative, unclassified
LOC_Os05g235901/11retrotransposon, putative, centromere-specific
LOC_Os07g239801/11retrotransposon, putative, centromere-specific
LOC_Os03g524701/11retrotransposon, putative, centromere-specific, expressed
LOC_Os06g279901/11retrotransposon, putative, centromere-specific
LOC_Os04g128641/11retrotransposon, putative, centromere-specific
LOC_Os04g174701/11retrotransposon, putative, centromere-specific
LOC_Os01g564101/11retrotransposon, putative, centromere-specific
LOC_Os08g300501/11retrotransposon, putative, centromere-specific
LOC_Os04g187001/11retrotransposon protein, putative, unclassified
LOC_Os03g336801/11retrotransposon protein, putative, unclassified
LOC_Os07g283801/11retrotransposon, putative, centromere-specific
LOC_Os02g238201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g156601/11retrotransposon, putative, centromere-specific
LOC_Os12g197301/11retrotransposon, putative, centromere-specific
LOC_Os07g207201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g253501/11retrotransposon, putative, centromere-specific
LOC_Os05g323401/11retrotransposon, putative, centromere-specific, expressed
LOC_Os04g186201/11retrotransposon, putative, centromere-specific
LOC_Os07g219501/11retrotransposon, putative, centromere-specific
LOC_Os09g063901/11retrotransposon, putative, centromere-specific
LOC_Os09g148101/11retrotransposon, putative, centromere-specific
LOC_Os07g208901/11retrotransposon, putative, centromere-specific
LOC_Os09g045801/11retrotransposon, putative, centromere-specific
LOC_Os04g177891/11retrotransposon, putative, centromere-specific
LOC_Os08g215201/11retrotransposon, putative, centromere-specific
LOC_Os01g313001/11retrotransposon, putative, centromere-specific
LOC_Os10g092801/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g238221/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g162801/11retrotransposon, putative, centromere-specific
LOC_Os04g212901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g443701/11retrotransposon, putative, centromere-specific
LOC_Os01g281301/11retrotransposon, putative, centromere-specific
LOC_Os07g209101/11retrotransposon, putative, centromere-specific
LOC_Os05g223901/11retrotransposon, putative, centromere-specific
LOC_Os01g391901/11retrotransposon, putative, centromere-specific
LOC_Os07g206301/11retrotransposon, putative, centromere-specific
LOC_Os09g044601/11retrotransposon, putative, centromere-specific
LOC_Os07g295001/11retrotransposon, putative, centromere-specific
LOC_Os09g038701/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g35570OsAffx.25365.1.S1_at11/113+19674199..19676710Transposable element protein, putative, Transposase_28
LOC_Os03g35580OsAffx.22719.1.S1_at11/113+19678395..19680259retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g35600Os.24924.1.S1_at11/113+19681517..19685875D-mannose binding lectin family protein, expressed
LOC_Os03g35610NANA3+19687797..19688889retrotransposon protein, putative, unclassified
LOC_Os03g35620OsAffx.25366.1.S1_at11/113+19690376..19692318hypothetical protein
LOC_Os03g35630OsAffx.1646.1.S1_x_at11/113+19692873..19693794retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g35630Os.20851.1.A1_x_at2/113+19692873..19693794retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g35630Os.55580.1.S1_at1/113+19692873..19693794retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g35630OsAffx.22442.1.S1_x_at1/113+19692873..19693794retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g35640Os.45161.1.A1_x_at11/113+19695064..19698279hypothetical protein
LOC_Os03g35650OsAffx.25367.1.S1_at9/113+19700648..19703132retrotransposon, putative, centromere-specific
LOC_Os03g35650Os.31845.2.S1_x_at1/113+19700648..19703132retrotransposon, putative, centromere-specific
LOC_Os03g35670NANA3+19711240..19713776retrotransposon protein, putative, unclassified
LOC_Os03g35690OsAffx.1646.1.S1_x_at1/113+19721635..19724601retrotransposon protein, putative, Ty3-gypsy subclass, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25367.1.S1_at--741--127186Chr12:11490677..11490711 (25 bp)
AGATCGGGCCATGAGTGTCGAGAGG
LOC_Os12g19730
OsAffx.25367.1.S1_at--705--1531NONE
AGCTTTCGTTGCTCGAAAGTGCGTA
NONE
OsAffx.25367.1.S1_at--576--9391NONE
TCGTTGCTCGAAAGTGCGTAATCAC
NONE
OsAffx.25367.1.S1_at--199--3011Chr03:19702875..19702899 (25 bp)
AATGACCCGCCAATTCCATTGTTCG
LOC_Os03g35650
OsAffx.25367.1.S1_at--132--3611Chr03:19702891..19702915 (25 bp)
CATTGTTCGCACTCAAGTTAGAGGC
LOC_Os03g35650
OsAffx.25367.1.S1_at--948--5091Chr03:19702899..19702923 (25 bp)
GCACTCAAGTTAGAGGCATCTCCAT
LOC_Os03g35650
OsAffx.25367.1.S1_at--959--6771Chr03:19702907..19702931 (25 bp)
GTTAGAGGCATCTCCATTATCTGAA
LOC_Os03g35650
OsAffx.25367.1.S1_at--36--6011Chr03:19702979..19703003 (25 bp)
GAGTGTTGTCAACGAAGTAAATTTG
LOC_Os03g35650
OsAffx.25367.1.S1_at--911--4311Chr03:19703005..19703029 (25 bp)
CCATTTTTCATGTTAAAGTAGAGCA
LOC_Os03g35650
OsAffx.25367.1.S1_at--10--1797Chr08:12817843..12818112 (25 bp)
ACCGTTAGTGGAATCAAATGTTGAA
LOC_Os08g21520
OsAffx.25367.1.S1_at--803--9692Chr03:19703043..19703067 (25 bp)
TCAAATGTTGAAATTCCTTTGTCAC
LOC_Os03g35650
Target Sequence 
AGATCGGGCCATGAGTGTCGAGAGGAACTCAGGGTTTATCAGGTGGTATCAGAGCTTTCGTTGCTCGAAAGTGCGTAATC
ACGAAAAGGAGGAGAGAGACATGAATGACCCGCCAATTCCATTGTTCGCACTCAAGTTAGAGGCATCTCCATTATCTGAA
GAGGACATCAAAGGTAAAGTAAATGGTGCTGAAATTAATCAAGGTGAGAGTGTTGTCAACGAAGTAAATTTGTCCATTTT
TCATGTTAAAGTAGAGCAACCGTTAGTGGAATCAAATGTTGAAATTCCTTTGTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25367.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis