Browse Element(s) Details


Os.45161.1.A1_x_at

Description gb:NM_184707.1
DB_XREF= gi:34896503
TID=Os.45161.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45161 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0057E11.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0057E11.21), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3564011/11hypothetical protein
LOC_Os02g246806/11retrotransposon protein, putative, unclassified
LOC_Os04g225603/11hypothetical protein
LOC_Os02g296603/11retrotransposon protein, putative, unclassified
LOC_Os08g236543/11retrotransposon protein, putative, unclassified
LOC_Os07g061102/11retrotransposon protein, putative, unclassified
LOC_Os01g518202/11retrotransposon protein, putative, unclassified
LOC_Os05g223902/11retrotransposon, putative, centromere-specific
LOC_Os02g490002/11retrotransposon protein, putative, unclassified
LOC_Os07g256302/11retrotransposon protein, putative, unclassified
LOC_Os05g162702/11retrotransposon protein, putative, unclassified
LOC_Os06g257602/11retrotransposon protein, putative, unclassified
LOC_Os02g116602/11retrotransposon protein, putative, unclassified
LOC_Os02g075201/11retrotransposon protein, putative, unclassified
LOC_Os01g587101/11retrotransposon protein, putative, unclassified, expressed
LOC_Os05g209901/11retrotransposon protein, putative, unclassified
LOC_Os02g488901/11hypothetical protein
LOC_Os10g060501/11retrotransposon protein, putative, unclassified
LOC_Os01g373401/11retrotransposon protein, putative, unclassified
LOC_Os01g623201/11retrotransposon protein, putative, unclassified
LOC_Os03g357401/11retrotransposon protein, putative, unclassified
LOC_Os07g206701/11retrotransposon protein, putative, unclassified
LOC_Os12g223201/11retrotransposon protein, putative, unclassified
LOC_Os04g190901/11retrotransposon protein, putative, unclassified
LOC_Os04g112401/11retrotransposon protein, putative, unclassified
LOC_Os04g226901/11retrotransposon protein, putative, unclassified
LOC_Os02g477301/11retrotransposon protein, putative, unclassified
LOC_Os01g484901/11retrotransposon protein, putative, unclassified
LOC_Os08g171801/11retrotransposon protein, putative, unclassified
LOC_Os01g640801/11retrotransposon protein, putative, unclassified
LOC_Os08g197301/11hypothetical protein
LOC_Os03g336701/11retrotransposon, putative, centromere-specific
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g35570OsAffx.25365.1.S1_at11/113+19674199..19676710Transposable element protein, putative, Transposase_28
LOC_Os03g35580OsAffx.22719.1.S1_at11/113+19678395..19680259retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g35600Os.24924.1.S1_at11/113+19681517..19685875D-mannose binding lectin family protein, expressed
LOC_Os03g35610NANA3+19687797..19688889retrotransposon protein, putative, unclassified
LOC_Os03g35620OsAffx.25366.1.S1_at11/113+19690376..19692318hypothetical protein
LOC_Os03g35630OsAffx.1646.1.S1_x_at11/113+19692873..19693794retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g35630Os.20851.1.A1_x_at2/113+19692873..19693794retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g35630Os.55580.1.S1_at1/113+19692873..19693794retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g35630OsAffx.22442.1.S1_x_at1/113+19692873..19693794retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g35640Os.45161.1.A1_x_at11/113+19695064..19698279hypothetical protein
LOC_Os03g35650OsAffx.25367.1.S1_at9/113+19700648..19703132retrotransposon, putative, centromere-specific
LOC_Os03g35650Os.31845.2.S1_x_at1/113+19700648..19703132retrotransposon, putative, centromere-specific
LOC_Os03g35670NANA3+19711240..19713776retrotransposon protein, putative, unclassified
LOC_Os03g35690OsAffx.1646.1.S1_x_at1/113+19721635..19724601retrotransposon protein, putative, Ty3-gypsy subclass, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45161.1.A1_x_at--78--100715Chr07:14690234..14690258 (25 bp)
TAGTGATGCGGCACAAGATTTTTTC
LOC_Os07g25630
Os.45161.1.A1_x_at--492--92116Chr10:3058376..3058399 (24 bp)
TCCAAATTATCGGTCTTTGATTACC
LOC_Os10g06050
Os.45161.1.A1_x_at--752--6756Chr05:12328865..12328889 (25 bp)
GTTCAGCCATCAACTCAGGCGGTTC
NONE
Os.45161.1.A1_x_at--750--2537Chr12:12599328..12599349 (22 bp)
AACTCAGGCGGTTCCCTCCGTTGCA
LOC_Os12g22320
Os.45161.1.A1_x_at--207--2093Chr05:12328904..12328928 (25 bp)
ACATCTCAGCCGACGGCACTGGCGT
NONE
Os.45161.1.A1_x_at--212--9674Chr08:14181970..14181989 (20 bp)
TCAGCCGACGGCACTGGCGTCAACT
LOC_Os08g23654
Os.45161.1.A1_x_at--366--8811Chr03:19695238..19695262 (25 bp)
TGTTCCGTCAGCACTGGCGCCAGGC
LOC_Os03g35640
Os.45161.1.A1_x_at--826--4395Chr07:14690525..14690544 (20 bp)
GCCAGTGAACCCTCAGTTGTTAATA
LOC_Os07g25630
Os.45161.1.A1_x_at--281--10718Chr05:12329022..12329046 (25 bp)
TTGCGAATCGGCTGACCCAAGATCA
LOC_Os05g20990
Os.45161.1.A1_x_at--671--12711Chr08:14182096..14182119 (24 bp)
AGATCAGGTTGCTGCCACGTTTCTA
LOC_Os08g23654
Os.45161.1.A1_x_at--1039--4013Chr07:11942365..11942388 (24 bp)
CGTTTCTACCACCTCAACCTATTGT
LOC_Os07g20670
Target Sequence 
TAGTGATGCGGCACAAGATTTTTTCAGTAATTTCCAAGATCGGGTTGACTACGTTGTGCATCATGCTTTGATCAATCAAT
CTGGGGTGTTAGTCAATACCTTATCAAACATGATGAAGTCAATAGCCGATGGTTCAATAGCTGAGCATCAGGCTGCAGGC
CCGGTTTATTTGCAAGGAGGTGTCTTTCCAAATTATCGGTCTTTGATTACCGATGTTCAGCCATCAACTCAGGCGGTTCC
CTCCGTTGCACCAACATCTCAGCCGACGGCACTGGCGTCAACTCCCCTACCTGTTCCGTCAGCACTGGCGCCAGGCCAGC
CAGTGAACCCTCAGTTGTTAATAAGAGAGCAGCCACAGCATGGCGGGCAGGTTGCGAATCGGCTGACCCAAGATCAGGTT
GCTGCCACGTTTCTACCACCTCAACCTATTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45161.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis