Browse Element(s) Details


Os.31845.2.S1_x_at

Description gb:AK068417.1
DB_XREF= gi:32978435
TID=Os.31845.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31845 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-113-F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013153L19, full insert sequence.
FL= gb:AK068417.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g166101/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g356501/11retrotransposon, putative, centromere-specific
LOC_Os10g331901/11expressed protein
LOC_Os01g297801/11retrotransposon protein, putative, unclassified
LOC_Os04g248041/11expressed protein
LOC_Os06g251101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g205901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g16570NANA7+9715748..9718933retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g16580Os.45173.1.S1_x_at3/117+9719199..9721123retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g16590NANA7+9728394..9733719retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g16600Os.52142.1.S1_at11/117+9736592..9739103expressed protein
LOC_Os07g16610Os.31845.2.S1_x_at1/117+9741812..9746931retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g16620NANA7+9748656..9751971retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g16630Os.45173.1.S1_x_at1/117+9757307..9764090retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g16640NANA7+9767744..9768664hypothetical protein
LOC_Os07g16650OsAffx.22947.1.S1_x_at8/117+9771697..9777770retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g16650OsAffx.22947.2.S1_x_at7/117+9771697..9777770retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g16650OsAffx.22947.3.S1_x_at7/117+9771697..9777770retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g16650OsAffx.22947.5.S1_x_at3/117+9771697..9777770retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31845.2.S1_x_at--1123--2531Chr04:8794565..8794589 (25 bp)
AACTCCGTTCAACTGCTTCCATCAT
NONE
Os.31845.2.S1_x_at--646--2551Chr04:8794555..8794579 (25 bp)
AACTGCTTCCATCATCGAATCCATT
NONE
Os.31845.2.S1_x_at--911--5251Chr04:8794450..8794563 (25 bp)
GAATCCATTCTCTCTGATCGAGCAG
NONE
Os.31845.2.S1_x_at--890--3593Chr03:19697828..19697941 (25 bp)
CATTCTCTCTGATCGAGCAGCCGAC
NONE
Os.31845.2.S1_x_at--330--5652Chr04:8792487..8792506 (20 bp)
GACATTTTCCAGTTTCAAGGTTTAG
NONE
Os.31845.2.S1_x_at--896--3431NONE
CAGTTTCAAGGTTTAGACTTAGTCT
NONE
Os.31845.2.S1_x_at--836--5711Chr04:8791092..8791116 (25 bp)
GACTGCTTCTTCTAAGACTTAAACT
NONE
Os.31845.2.S1_x_at--749--71932Chr12:20086513..20086543 (25 bp)
GTCGGTGTGCATTGGGTAGACAAGC
NONE
Os.31845.2.S1_x_at--466--10737Chr12:20086629..20086649 (21 bp)
TTGCTATGTATAACCATGCTTTTGA
NONE
Os.31845.2.S1_x_at--524--352Chr04:8790930..8790954 (25 bp)
ATAACCATGCTTTTGATGAAAGTGT
NONE
Os.31845.2.S1_x_at--1118--10231Chr04:8790856..8790880 (25 bp)
TTTGAGATGTTACAGATCTTTAGCC
NONE
Target Sequence 
AACTCCGTTCAACTGCTTCCATCATCGAATCCATTCTCTCTGATCGAGCAGCCGACGTCATCCCTGGAGTTGTGCCATGC
CGCCATGGAGCTTCGCCGTCGCTGTGGCTCTGCAGACAACCCNCAGCCTTGTCTAGCATCTCGATAATTGCTTAATCGGT
GAAGAAGTGAATTAGGTGCTGACATTTTCCAGTTTCAAGGTTTAGACTTAGTCTTTGAGTGATGCGGGTAATCGACTGCT
TCTTCTAAGACTTAAACTTAATGGGGTAAACCCCTAGTCGGTGTGCATTGGGTAGACAAGCTTCCGCTGTTCTATTATTT
ATTTGGCCGGTCGGCTGGTGTAACTAANGTAGATGTAGTTTATAATCGTTTTCATCTTATTTATGTTTGCTATGTATAAC
CATGCTTTTGATGAAAGTGTGAATCTAGTGCACATCGAACTAGATTCACATGAGTATGAGTTAAGAATATTTGAGATGTT
ACAGATCTTTAGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31845.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis