Browse Element(s) Details


OsAffx.22947.2.S1_x_at

Description gb:NM_186744.1
DB_XREF= gi:34900573
GEN=P0565A07.20
TID=OsAffx.22947.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0565A07.20 (P0565A07.20), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1342011/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g1092010/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g3222010/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g3210010/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g5050010/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g383209/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g201509/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g182009/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g343509/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g106209/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g044909/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g293808/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g247308/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g174898/11UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os02g280108/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g166008/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g393308/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g197408/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g194108/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g415207/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g264607/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g216407/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g415107/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g415007/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g136107/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g166507/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g303707/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g456307/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g215606/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g312406/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g305806/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g191506/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g047405/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g332505/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g296605/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g181605/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g208105/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g517705/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g109704/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g075204/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g363604/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g444904/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g494904/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g357104/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g012804/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g253304/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g291304/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g109204/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g155604/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g493304/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g164304/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g200204/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g255904/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g361904/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g397403/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g192403/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g012403/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g297903/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g152103/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g197803/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g413303/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g238103/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g069803/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g062593/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g222403/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g197703/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g558903/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g034903/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g715303/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g475403/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g539603/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g062683/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g400303/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g201102/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g198302/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g180302/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g145802/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g262602/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g171202/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g520702/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g123702/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g219502/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g447301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g321201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g014501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g392501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g342601/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g083901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g216401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g363601/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g378401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g020601/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g336901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g212801/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g193301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g434601/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g585701/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g553201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g538901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g303401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g216401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g248201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g351401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g384201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g197501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g151001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g139001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g048301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g181001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g122101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g154501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g021101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g484401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g198401/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g13380OsAffx.5316.1.S1_at11/117+7668345..7668584hypothetical protein
LOC_Os07g13390OsAffx.22940.1.S1_s_at10/117+7673414..7680964Transposable element protein, putative, MuDR
LOC_Os07g13390OsAffx.22940.5.S1_x_at10/117+7673414..7680964Transposable element protein, putative, MuDR
LOC_Os07g13390Os.35344.3.S1_x_at10/117+7673414..7680964Transposable element protein, putative, MuDR
LOC_Os07g13390Os.35344.18.S1_x_at10/117+7673414..7680964Transposable element protein, putative, MuDR
LOC_Os07g13390OsAffx.22940.2.S1_s_at9/117+7673414..7680964Transposable element protein, putative, MuDR
LOC_Os07g13390OsAffx.22940.5.S1_at9/117+7673414..7680964Transposable element protein, putative, MuDR
LOC_Os07g13390OsAffx.22940.2.S1_at8/117+7673414..7680964Transposable element protein, putative, MuDR
LOC_Os07g13390OsAffx.22940.3.S1_x_at6/117+7673414..7680964Transposable element protein, putative, MuDR
LOC_Os07g13400OsAffx.22421.2.S1_at1/117+7686410..7688767transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13400OsAffx.16244.1.S1_x_at1/117+7686410..7688767transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13420OsAffx.22947.2.S1_x_at11/117+7692341..7696885retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g13420OsAffx.22947.1.S1_x_at7/117+7692341..7696885retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g13420OsAffx.22947.3.S1_x_at5/117+7692341..7696885retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g13420OsAffx.22947.5.S1_x_at3/117+7692341..7696885retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g13430Os.27435.1.S1_x_at11/117+7700298..7704788transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13430Os.27435.1.S1_at11/117+7700298..7704788transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13430Os.51856.1.S2_at3/117+7700298..7704788transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13430Os.46334.1.S1_x_at3/117+7700298..7704788transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13430Os.51856.1.S2_x_at3/117+7700298..7704788transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13430Os.46985.1.S1_x_at2/117+7700298..7704788transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13430Os.46334.1.S1_at1/117+7700298..7704788transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13440Os.12306.1.S1_at3/117+7706895..7707119hypothetical protein
LOC_Os07g13450Os.25193.1.S1_at10/117+7708866..7709367expressed protein
LOC_Os07g13460Os.10093.2.S1_at11/117+7711755..7718975expressed protein
LOC_Os07g13460Os.10093.3.S1_x_at11/117+7711755..7718975expressed protein
LOC_Os07g13470Os.31993.2.S1_x_at11/117+7719484..7722117calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g13470Os.31993.1.S1_at11/117+7719484..7722117calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g13470OsAffx.198.1.S1_at1/117+7719484..7722117calcineurin-like phosphoesterase family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22947.2.S1_x_at--628--85331Chr12:18191766..18191790 (25 bp)
TGGACGAAGGTGTCGTACTCCGCTC
LOC_Os12g30340
OsAffx.22947.2.S1_x_at--10--28933Chr12:18204768..18204792 (25 bp)
AAGGGAGCTCGCTTTCGAAACAGGG
LOC_Os12g30370
OsAffx.22947.2.S1_x_at--473--76539Chr12:18204825..18204849 (25 bp)
GGGAGTACATCGCTTCCAAACCAAA
LOC_Os12g30370
OsAffx.22947.2.S1_x_at--880--18364Chr12:20312075..20312099 (25 bp)
ACGCTTTGTGGGACCATACAGGATC
LOC_Os12g33690
OsAffx.22947.2.S1_x_at--933--80934Chr12:18204874..18204898 (25 bp)
GGACCATACAGGATCTTGGAACGTA
LOC_Os12g30370
OsAffx.22947.2.S1_x_at--1142--28146Chr12:24721366..24721390 (25 bp)
AAGTTGCTTACCAGCTTGAGCTTCC
LOC_Os12g40030
OsAffx.22947.2.S1_x_at--271--15571Chr12:24721384..24721408 (25 bp)
AGCTTCCCTCCAACATGCTTGGCAT
LOC_Os12g40030
OsAffx.22947.2.S1_x_at--442--22978Chr12:24721440..24721464 (25 bp)
AAATGTTTGAGAGTTCCTGAGGAAC
LOC_Os12g40030
OsAffx.22947.2.S1_x_at--1065--9329Chr12:18205004..18205028 (25 bp)
AGGCAAGTCCGGATCACATCGAAAT
LOC_Os12g30370
OsAffx.22947.2.S1_x_at--100--64145Chr12:18205036..18205060 (25 bp)
GATCTGACGTATGTGGAGAAGCCGA
LOC_Os12g30370
OsAffx.22947.2.S1_x_at--1018--59542Chr12:18205051..18205075 (25 bp)
GAGAAGCCGACTCGTATCCTCGAAA
LOC_Os12g30370
Target Sequence 
TGGACGAAGGTGTCGTACTCCGCTCTTCTGGGATCAGACAGGGGAACGCCAATTGTTTGGTACAGAAGTTTTAAATGAGG
CAGAAGAAAAAGTCAGAGCTGTTAGGGAAAGATTGAGAATTGCGCAATCTCGGCAGAAAAGCTATGCAGACAACCGCCGA
AGGGAGCTCGCTTTCGAAACAGGGGATTATGTGTATCTCCGTGTCACTCCGCTCAGGGGAGTACATCGCTTCCAAACCAA
AGGAAAGTTGGCACCACGCTTTGTGGGACCATACAGGATCTTGGAACGTAGAGGTGAAGTTGCTTACCAGCTTGAGCTTC
CCTCCAACATGCTTGGCATCCACAACGTGTTCCACGTCTCTCAGTTGAAGAAATGTTTGAGAGTTCCTGAGGAACAGGCA
AGTCCGGATCACATCGAAATTCAGGAAGATCTGACGTATGTGGAGAAGCCGACTCGTATCCTCGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22947.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis