Browse Element(s) Details


OsAffx.16244.1.S1_x_at

Description gb:NM_186743.1
DB_XREF= gi:34900571
GEN=P0565A07.19
TID=OsAffx.16244.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0565A07.19 (P0565A07.19), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g238701/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g263201/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g261901/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g342001/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g212801/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g134001/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g284201/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g342901/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g231901/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g204901/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g144701/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g076101/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g303701/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g578081/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g290001/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g013901/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g271401/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g210301/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g161401/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g409201/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g179701/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g255501/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g221601/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g512901/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g355201/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g320901/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g141301/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g230101/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g23830Os.26886.3.S1_x_at4/119+14203203..14205387transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g23840Os.24831.1.S1_x_at6/119+14208346..14212495retrotransposon protein, putative, unclassified
LOC_Os09g23840Os.24831.3.S1_x_at6/119+14208346..14212495retrotransposon protein, putative, unclassified
LOC_Os09g23840Os.24831.2.S1_at5/119+14208346..14212495retrotransposon protein, putative, unclassified
LOC_Os09g23840Os.24831.4.S1_x_at2/119+14208346..14212495retrotransposon protein, putative, unclassified
LOC_Os09g23840Os.55127.1.S1_at1/119+14208346..14212495retrotransposon protein, putative, unclassified
LOC_Os09g23850OsAffx.20733.1.A1_x_at2/119+14217622..14222961retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g23860Os.45173.1.S1_x_at1/119+14225130..14228705retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g23870Os.26886.1.S1_x_at8/119+14229942..14232417transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g23870OsAffx.16244.1.S1_x_at1/119+14229942..14232417transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g23870Os.47999.3.S1_x_at1/119+14229942..14232417transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g23870OsAffx.20733.1.S1_x_at1/119+14229942..14232417transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g23870OsAffx.8338.1.S1_x_at1/119+14229942..14232417transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g23880NANA9+14238534..14241159transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g23890NANA9+14241752..14242440hypothetical protein
LOC_Os09g23899Os.17958.1.S1_at10/119+14255378..14256188expressed protein
LOC_Os09g23899OsAffx.17938.1.S1_at1/119+14255378..14256188expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16244.1.S1_x_at--458--77335Chr12:19331183..19331206 (24 bp)
GGTGGACAACGTCGTCGATGAAGAG
LOC_Os12g32090
OsAffx.16244.1.S1_x_at--530--2451NONE
AACAAGAATCTTCATATCCACCACC
NONE
OsAffx.16244.1.S1_x_at--932--2211NONE
ACAAGAATCTTCATATCCACCACCG
NONE
OsAffx.16244.1.S1_x_at--484--3791Chr07:7689693..7689717 (25 bp)
CTCGTCGTGGATCCGGCATCCCTGA
NONE
OsAffx.16244.1.S1_x_at--694--9711Chr07:7689869..7689893 (25 bp)
TCAAGACCGATGCCGCGGCCATTTC
NONE
OsAffx.16244.1.S1_x_at--1132--9292Chr07:7689939..7689963 (25 bp)
TCCCTCGAAGATCCGGCCTTACTGA
NONE
OsAffx.16244.1.S1_x_at--275--5351Chr07:7689945..7689969 (25 bp)
GAAGATCCGGCCTTACTGACCACGG
NONE
OsAffx.16244.1.S1_x_at--576--1251Chr07:7689991..7690015 (25 bp)
AGATCTACGCCCGACGGCCGTCGAC
NONE
OsAffx.16244.1.S1_x_at--490--4771Chr07:7690051..7690075 (25 bp)
GCTGCCTCCCTCTACCGATTGTCGA
NONE
OsAffx.16244.1.S1_x_at--593--6571Chr07:7690067..7690091 (25 bp)
GATTGTCGACCACCGCCGTTGCGGA
NONE
OsAffx.16244.1.S1_x_at--849--4031Chr07:7690083..7690107 (25 bp)
CGTTGCGGAAGACCGCCGTCCTTGA
NONE
Target Sequence 
GGTGGACAACGTCGTCGATGAAGAGGAATACAACAAGAATCTTCATATCCACCACCGCCTCCTCCTCCTCGACGCCGCCA
CCGCCTCCCAGTTCAACATCCACCGCTGCCTCCTCCCTCGTCGTGGATCCGGCATCCCTGACCACCGCCGCCGCCTCCCG
TCCTCAAGACCGATGCCGCGGCCATTTCACCGACCGCCGCTGCCTCCTCGTCCTCAACGCTGCCGCCTCGTCCTCCCTCG
AAGATCCGGCCTTACTGACCACGGCCGCCTCACATCCTCCTCTCCAGATCTACGCCCGACGGCCGTCGACCTCATCCTAG
CCGCCGCGTCGACCTCCTCCACGCCGCTGCCTCCCTCTACCGATTGTCGACCACCGCCGTTGCGGAAGACCGCCGTCCTT
GA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16244.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis