Browse Element(s) Details


OsAffx.17938.1.S1_at

Description tigr:9637.m02440
TID=OsAffx.17938.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2771011/11hypothetical protein
LOC_Os09g238991/11expressed protein
LOC_Os09g239801/11hypothetical protein
LOC_Os09g239081/11expressed protein
LOC_Os09g239301/11retrotransposon protein, putative, unclassified
LOC_Os09g239481/11expressed protein
LOC_Os09g239661/11expressed protein
LOC_Os09g241401/11expressed protein
LOC_Os09g239391/11hypothetical protein
LOC_Os09g239571/11hypothetical protein
LOC_Os09g241301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27670OsAffx.17937.1.S1_at11/119+16845524..16846607hypothetical protein
LOC_Os09g27680Os.50860.1.S1_at2/119+16847165..16847464expressed protein
LOC_Os09g27690Os.8438.1.S1_at11/119+16851237..16853657expressed protein
LOC_Os09g27690OsAffx.30062.1.S1_at7/119+16851237..16853657expressed protein
LOC_Os09g27700Os.20136.1.S1_a_at11/119+16854329..16860063microtubule associated protein family protein, putative, expressed
LOC_Os09g27710OsAffx.17938.1.S1_at11/119+16866459..16867177hypothetical protein
LOC_Os09g27720OsAffx.17939.1.S1_at11/119+16869210..16869963hypothetical protein
LOC_Os09g27730OsAffx.6418.1.S1_s_at11/119+16874540..16875338HVA22 protein, putative, expressed
LOC_Os09g27730OsAffx.6418.1.S1_at11/119+16874540..16875338HVA22 protein, putative, expressed
LOC_Os09g27740OsAffx.6419.1.S1_at11/119+16880452..16881137hypothetical protein
LOC_Os09g27750Os.12201.1.S1_at11/119+16885039..168866041-aminocyclopropane-1-carboxylate oxidase 1, putative, expressed
LOC_Os09g27760NANA9+16889521..16892468retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17938.1.S1_at--12--671Chr09:16866492..16866764 (25 bp)
ATGAAGCCGGCCATCGTGGTATCAG
LOC_Os09g27710
OsAffx.17938.1.S1_at--245--1091Chr09:16866778..16866802 (25 bp)
AGTGGAATGCAAAGCCCCTATCGAT
LOC_Os09g27710
OsAffx.17938.1.S1_at--354--4531Chr09:16866791..16866815 (25 bp)
GCCCCTATCGATAAGTGCTTGACTG
LOC_Os09g27710
OsAffx.17938.1.S1_at--902--2931Chr09:16866836..16866860 (25 bp)
AAGGCCCTCGAAGCCCTTATGGATA
LOC_Os09g27710
OsAffx.17938.1.S1_at--971--3191Chr09:16866892..16866916 (25 bp)
CAAGGCCCTTGATGTTGTTGTGGTT
LOC_Os09g27710
OsAffx.17938.1.S1_at--43--7531Chr09:16866958..16866982 (25 bp)
GTGGAAGCAGAGAATGTTCGCCTTT
LOC_Os09g27710
OsAffx.17938.1.S1_at--232--10651Chr09:16866974..16866998 (25 bp)
TTCGCCTTTGCTGCTCTCGGAATGG
LOC_Os09g27710
OsAffx.17938.1.S1_at--875--5531Chr09:16867015..16867039 (25 bp)
GAAACTTGCTACAGCTTCACTTGCC
LOC_Os09g27710
OsAffx.17938.1.S1_at--1026--5271Chr09:16867045..16867069 (25 bp)
GAATGTTGCTAATGCTGTCCTCACA
LOC_Os09g27710
OsAffx.17938.1.S1_at--424--1671Chr09:16867069..16867093 (25 bp)
AGCCGCACCTGCTGAGAAGTTTAAA
LOC_Os09g27710
OsAffx.17938.1.S1_at--490--30311Chr09:16867104..16867128 (25 bp)
AATCCTTCAAAGTGGCTGCTAGACA
LOC_Os09g27710
Target Sequence 
ATGAAGCCGGCCATCGTGGTATCAGCCGTGTTAGTGCAAGTGGAATGCAAAGCCCCTATCGATAAGTGCTTGACTGAGGC
AAGTCAAGCCATCAACAAGGCCCTCGAAGCCCTTATGGATAAGCGCTTGACTGAGGCAAGTCAGGCCAACAACAAGGCCC
TTGATGTTGTTGTGGTTGCTGCCCCACCAGCAAAAAAGTCTGAAATTGAACATGCCATGTGGAAGCAGAGAATGTTCGCC
TTTGCTGCTCTCGGAATGGCCGAAGGAGATGAGAAGAAACTTGCTACAGCTTCACTTGCCTACAAGAATGTTGCTAATGC
TGTCCTCACAGCCGCACCTGCTGAGAAGTTTAAAGTGATGGAAGAATCCTTCAAAGTGGCTGCTAGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17938.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis