Browse Element(s) Details


Os.20136.1.S1_a_at

Description gb:AK068826.1
DB_XREF= gi:32978851
TID=Os.20136.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.20136 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023121L11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013164I23, full insert sequence.
FL= gb:AK068826.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2770011/11microtubule associated protein family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27660Os.20476.2.S1_a_at11/119+16827921..16837339ANTH domain containing protein, expressed
LOC_Os09g27660Os.57346.1.S1_at10/119+16827921..16837339ANTH domain containing protein, expressed
LOC_Os09g27660Os.20476.1.A1_at7/119+16827921..16837339ANTH domain containing protein, expressed
LOC_Os09g27660OsAffx.1705.1.S1_at1/119+16827921..16837339ANTH domain containing protein, expressed
LOC_Os09g27670OsAffx.17937.1.S1_at11/119+16845524..16846607hypothetical protein
LOC_Os09g27680Os.50860.1.S1_at2/119+16847165..16847464expressed protein
LOC_Os09g27690Os.8438.1.S1_at11/119+16851237..16853657expressed protein
LOC_Os09g27690OsAffx.30062.1.S1_at7/119+16851237..16853657expressed protein
LOC_Os09g27700Os.20136.1.S1_a_at11/119+16854329..16860063microtubule associated protein family protein, putative, expressed
LOC_Os09g27710OsAffx.17938.1.S1_at11/119+16866459..16867177hypothetical protein
LOC_Os09g27720OsAffx.17939.1.S1_at11/119+16869210..16869963hypothetical protein
LOC_Os09g27730OsAffx.6418.1.S1_s_at11/119+16874540..16875338HVA22 protein, putative, expressed
LOC_Os09g27730OsAffx.6418.1.S1_at11/119+16874540..16875338HVA22 protein, putative, expressed
LOC_Os09g27740OsAffx.6419.1.S1_at11/119+16880452..16881137hypothetical protein
LOC_Os09g27750Os.12201.1.S1_at11/119+16885039..168866041-aminocyclopropane-1-carboxylate oxidase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000910biological_processcytokinesis
GO:0001578biological_processmicrotubule bundle formation
GO:0007020biological_processmicrotubule nucleation
GO:0031116biological_processpositive regulation of microtubule polymerization
GO:0051322biological_processanaphase
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005739cellular_componentmitochondrion
GO:0005819cellular_componentspindle
GO:0009524cellular_componentphragmoplast
GO:0009536cellular_componentplastid
GO:0010005cellular_componentcortical microtubule (sensu Viridiplantae)
GO:0008017molecular_functionmicrotubule binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20136.1.S1_a_at--110--6751Chr09:16855041..16855065 (25 bp)
GTTCAAGTGGAACTACCAGTGGACT
LOC_Os09g27700
Os.20136.1.S1_a_at--903--8111Chr09:16855021..16855045 (25 bp)
GGACTAATGACTCCAAATCCCCGGA
LOC_Os09g27700
Os.20136.1.S1_a_at--931--1271Chr09:16854997..16855021 (25 bp)
AGATCATCTCTTGGTGGTGCTACTC
LOC_Os09g27700
Os.20136.1.S1_a_at--1080--8891Chr09:16854971..16854995 (25 bp)
TGAGCTTTTGACACCCAGATCGTGT
LOC_Os09g27700
Os.20136.1.S1_a_at--228--4871Chr09:16854872..16854896 (25 bp)
GCTATCCACTTTCACATCCATTAGT
LOC_Os09g27700
Os.20136.1.S1_a_at--616--3411Chr09:16854837..16854861 (25 bp)
CAGAATCCCCTTCTTTGGGATAAAT
LOC_Os09g27700
Os.20136.1.S1_a_at--569--9551Chr09:16854634..16854658 (25 bp)
TCTTATTGCCAAGTAATCACCTGTT
LOC_Os09g27700
Os.20136.1.S1_a_at--240--751Chr09:16854561..16854585 (25 bp)
ATGTATTGTATTTAGCTTGTCTGCT
LOC_Os09g27700
Os.20136.1.S1_a_at--1155--3611Chr09:16854546..16854570 (25 bp)
CTTGTCTGCTGGTATTGACTTGTAA
LOC_Os09g27700
Os.20136.1.S1_a_at--539--2071Chr09:16854529..16854553 (25 bp)
ACTTGTAAGCACTGGAATGGTTGAC
LOC_Os09g27700
Os.20136.1.S1_a_at--1090--10471Chr09:16854474..16854498 (25 bp)
TTGAGGGCTTTGTAGATTGACGGTT
LOC_Os09g27700
Target Sequence 
GTTCAAGTGGAACTACCAGTGGACTAATGACTCCAAATCCCCGGAGATCATCTCTTGGTGGTGCTACTCCTGAGCTTTTG
ACACCCAGATCGTGTTNTGGTCACTATAATAGATACTTTAGTGATTCAAGGAGGNTATCAGCTACTCAATTGAACTTNGG
TGANGACTCGCTATCCACTTTCACATCCATTAGTGGTTNTGAACCAGAATCCCCTTCTTTGGGATAAATTCAGTNCCTTT
TNTGGTCAATTTATTGGTCTTATTGCCAAGTAATCACCTGTTAATGGAGCANTATTCTANGAGTTTNTCGCATTTGTATG
TACATTACTGATGTATTGTATTTAGCTTGTCTGCTGGTATTGACTTGTAAGCACTGGAATGGTTGACTTGGTTTGGGTTT
GGAGTTGATGTTTTGAGTTGAGGGCTTTGTAGATTGACGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20136.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis