Browse Element(s) Details


OsAffx.6419.1.S1_at

Description tigr:9637.m02443
TID=OsAffx.6419.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2774011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27700Os.20136.1.S1_a_at11/119+16854329..16860063microtubule associated protein family protein, putative, expressed
LOC_Os09g27710OsAffx.17938.1.S1_at11/119+16866459..16867177hypothetical protein
LOC_Os09g27720OsAffx.17939.1.S1_at11/119+16869210..16869963hypothetical protein
LOC_Os09g27730OsAffx.6418.1.S1_s_at11/119+16874540..16875338HVA22 protein, putative, expressed
LOC_Os09g27730OsAffx.6418.1.S1_at11/119+16874540..16875338HVA22 protein, putative, expressed
LOC_Os09g27740OsAffx.6419.1.S1_at11/119+16880452..16881137hypothetical protein
LOC_Os09g27750Os.12201.1.S1_at11/119+16885039..168866041-aminocyclopropane-1-carboxylate oxidase 1, putative, expressed
LOC_Os09g27760NANA9+16889521..16892468retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g27770NANA9+16895684..16898608retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g27780Os.46995.1.S1_x_at1/119+16899085..16902015retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6419.1.S1_at--627--2631Chr09:16880554..16880578 (25 bp)
AACCTCCACCACTGGCACGTGAGGT
LOC_Os09g27740
OsAffx.6419.1.S1_at--389--8351Chr09:16880583..16880607 (25 bp)
GGCGGTGCGCTTTCCCAACGACGAC
LOC_Os09g27740
OsAffx.6419.1.S1_at--263--8391Chr09:16880643..16880667 (25 bp)
GGCGCACTCAGATTCGAGCCACTCG
LOC_Os09g27740
OsAffx.6419.1.S1_at--487--9371Chr09:16880656..16880680 (25 bp)
TCGAGCCACTCGGAGCACGTGAGCT
LOC_Os09g27740
OsAffx.6419.1.S1_at--356--3771Chr09:16880805..16880829 (25 bp)
CTCTGGGAGGCGAGATGCATGCCAT
LOC_Os09g27740
OsAffx.6419.1.S1_at--797--1291Chr09:16880817..16880841 (25 bp)
AGATGCATGCCATCTCTTGCCGTGG
LOC_Os09g27740
OsAffx.6419.1.S1_at--344--7531Chr09:16880838..16880862 (25 bp)
GTGGCGGAGGTGGTCTCTCTCCCTA
LOC_Os09g27740
OsAffx.6419.1.S1_at--654--9311Chr09:16880873..16880897 (25 bp)
TCCCGTCGCCGGATGGGAGCTCGAT
LOC_Os09g27740
OsAffx.6419.1.S1_at--251--9351Chr09:16880945..16880969 (25 bp)
TCGCGGCAGCAGATCCGTAGATCAC
LOC_Os09g27740
OsAffx.6419.1.S1_at--762--6931Chr09:16880961..16880985 (25 bp)
GTAGATCACCGAGATGGAAGCCACA
LOC_Os09g27740
OsAffx.6419.1.S1_at--85--9491Chr09:16881041..16881065 (25 bp)
TCTCCGTGCCACAGCGGGAAAAGGG
LOC_Os09g27740
Target Sequence 
AACCTCCACCACTGGCACGTGAGGTGGCCGGCGGTGCGCTTTCCCAACGACGACGAGGTGGAGGAGGAGCAGGAAGAGGG
GGACCCGCCGGCGCACTCAGATTCGAGCCACTCGGAGCACGTGAGCTGGGTGTGCGCGGCCATCGTGGACGTCGTTGTGG
TGGGCGCTGACCTTGTGCTCTGGGAGGCGAGATGCATGCCATCTCTTGCCGTGGCGGAGGTGGTCTCTCTCCCTATCTCG
CTGCCTCCCGTCGCCGGATGGGAGCTCGATCTCCAACCTCATTTCTTGCCCGCTCGAGCTTCGACCTCACCACTTCCTCG
CGGCAGCAGATCCGTAGATCACCGAGATGGAAGCCACAGCGAGCTCCACCGGTCGCTGATGCCGCCTCTCCTTGCTCTGC
CCTACCGCCTCCCTCTCCGTGCCACAGCGGGAAAAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6419.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis