Browse Element(s) Details


Os.12201.1.S1_at

Description gb:AK065039.1
DB_XREF= gi:32975057
TID=Os.12201.1
CNT=23
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12201 (NCBI UniGene Cluster)
UG_TITLE=O.sativa mRNA for 1-aminocyclopropane-1-carboxylate oxidase
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001H16, full insert sequence.
FL= gb:AK065039.1 gb:AK104933.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2775011/111-aminocyclopropane-1-carboxylate oxidase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27700Os.20136.1.S1_a_at11/119+16854329..16860063microtubule associated protein family protein, putative, expressed
LOC_Os09g27710OsAffx.17938.1.S1_at11/119+16866459..16867177hypothetical protein
LOC_Os09g27720OsAffx.17939.1.S1_at11/119+16869210..16869963hypothetical protein
LOC_Os09g27730OsAffx.6418.1.S1_s_at11/119+16874540..16875338HVA22 protein, putative, expressed
LOC_Os09g27730OsAffx.6418.1.S1_at11/119+16874540..16875338HVA22 protein, putative, expressed
LOC_Os09g27740OsAffx.6419.1.S1_at11/119+16880452..16881137hypothetical protein
LOC_Os09g27750Os.12201.1.S1_at11/119+16885039..168866041-aminocyclopropane-1-carboxylate oxidase 1, putative, expressed
LOC_Os09g27760NANA9+16889521..16892468retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g27770NANA9+16895684..16898608retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g27780Os.46995.1.S1_x_at1/119+16899085..16902015retrotransposon protein, putative, unclassified
LOC_Os09g27789NANA9+16907262..16907946NA

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Gene Ontology Classification
GO idTypeName
GO:0009693biological_processethylene biosynthesis
GO:0009727biological_processdetection of ethylene stimulus
GO:0009815molecular_function1-aminocyclopropane-1-carboxylate oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12201.1.S1_at--723--8371Chr09:16885552..16885576 (25 bp)
GGCGAGACGTATCCCAAGTTCGTGT
LOC_Os09g27750
Os.12201.1.S1_at--631--2611Chr09:16885435..16885459 (25 bp)
AACCGCATTGCCATCGCTTGATAGC
LOC_Os09g27750
Os.12201.1.S1_at--803--8831Chr09:16885417..16885441 (25 bp)
TGATAGCGTGTGTACCACAGCGACC
LOC_Os09g27750
Os.12201.1.S1_at--49--10071Chr09:16885366..16885390 (25 bp)
TAGTCGTGTTCGTAGTGATCAGTGC
LOC_Os09g27750
Os.12201.1.S1_at--113--8851Chr09:16885351..16885375 (25 bp)
TGATCAGTGCGTGCATGGTCAGCTA
LOC_Os09g27750
Os.12201.1.S1_at--389--7171Chr09:16885280..16885304 (25 bp)
GTCTCGTCACCTTGGATAATTGTCA
LOC_Os09g27750
Os.12201.1.S1_at--172--9751Chr09:16885264..16885288 (25 bp)
TAATTGTCAGTTGGTGTGGCGTGCT
LOC_Os09g27750
Os.12201.1.S1_at--532--1891Chr09:16885234..16885258 (25 bp)
ACGTACGGCCATGTATCTTTGTCGG
LOC_Os09g27750
Os.12201.1.S1_at--194--8351Chr09:16885211..16885235 (25 bp)
GGCTGTCCTCGTGTGGTACTTGATA
LOC_Os09g27750
Os.12201.1.S1_at--683--7011Chr09:16885196..16885220 (25 bp)
GTACTTGATAGCTTGTGCGGCGTGC
LOC_Os09g27750
Os.12201.1.S1_at--562--3951Chr09:16885160..16885184 (25 bp)
CGGTTTATTATCTACTCCAGTTCTA
LOC_Os09g27750
Target Sequence 
GGCGAGACGTATCCCAAGTTCGTGTTCGAGGACTACATGAAGCTGTACGTGCGCCACAAGTTCGAGGCCAAGGAGCCCCG
GTTCGAGGCGTTCAAGGCCATGGAGAACGAGACCCCCAACCGCATTGCCATCGCTTGATAGCGTGTGTACCACAGCGACC
CCTACCGGGNTCGGTGTCAGTAAGGTTTAGTCGTGTTCGTAGTGATCAGTGCGTGCATGGTCAGCTACTCAGCTCGCGTT
TTCTACCTNAATAAATTAAGCTCCGTCGTCGTCGTCTCGTCACCTTGGATAATTGTCAGTTGGTGTGGCGTGCTGTTGCA
CGTACGGCCATGTATCTTTGTCGGCTGTCCTCGTGTGGTACTTGATAGCTTGTGCGGCGTGCTGTACCGTGTACGGTTTA
TTATCTACTCCAGTTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12201.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis