Browse Element(s) Details


OsAffx.17937.1.S1_at

Description tigr:9637.m02436
TID=OsAffx.17937.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2767011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27650Os.5733.1.A1_s_at11/119+16821231..16824664Zinc finger, C2H2 type family protein, expressed
LOC_Os09g27660Os.20476.2.S1_a_at11/119+16827921..16837339ANTH domain containing protein, expressed
LOC_Os09g27660Os.57346.1.S1_at10/119+16827921..16837339ANTH domain containing protein, expressed
LOC_Os09g27660Os.20476.1.A1_at7/119+16827921..16837339ANTH domain containing protein, expressed
LOC_Os09g27660OsAffx.1705.1.S1_at1/119+16827921..16837339ANTH domain containing protein, expressed
LOC_Os09g27670OsAffx.17937.1.S1_at11/119+16845524..16846607hypothetical protein
LOC_Os09g27680Os.50860.1.S1_at2/119+16847165..16847464expressed protein
LOC_Os09g27690Os.8438.1.S1_at11/119+16851237..16853657expressed protein
LOC_Os09g27690OsAffx.30062.1.S1_at7/119+16851237..16853657expressed protein
LOC_Os09g27700Os.20136.1.S1_a_at11/119+16854329..16860063microtubule associated protein family protein, putative, expressed
LOC_Os09g27710OsAffx.17938.1.S1_at11/119+16866459..16867177hypothetical protein
LOC_Os09g27720OsAffx.17939.1.S1_at11/119+16869210..16869963hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17937.1.S1_at--24--691Chr09:16846212..16846236 (25 bp)
ATGACTACCCTGATCGATCTGGATG
LOC_Os09g27670
OsAffx.17937.1.S1_at--781--8391Chr09:16846236..16846260 (25 bp)
GGCGCTGTGTGGAACATGGACTACA
LOC_Os09g27670
OsAffx.17937.1.S1_at--1049--4831Chr09:16846294..16846318 (25 bp)
GCTACAAGCTAGCAAGCCGGGCTGA
LOC_Os09g27670
OsAffx.17937.1.S1_at--144--851Chr09:16846364..16846388 (25 bp)
ATGGCATACTCCACTTTCTACTAGA
LOC_Os09g27670
OsAffx.17937.1.S1_at--884--10391Chr09:16846398..16846422 (25 bp)
TTTTGCGGTGAACATGTGCGCCAGC
LOC_Os09g27670
OsAffx.17937.1.S1_at--1067--2771Chr09:16846429..16846453 (25 bp)
AAGAGCAGGGTCCTGCACTTCGAGA
LOC_Os09g27670
OsAffx.17937.1.S1_at--767--4571Chr09:16846466..16846490 (25 bp)
GCGCTGGCGTCGACTCCTTGGAGAA
LOC_Os09g27670
OsAffx.17937.1.S1_at--156--8071Chr09:16846485..16846509 (25 bp)
GGAGAAGTACCAGAACTCGCGATTC
LOC_Os09g27670
OsAffx.17937.1.S1_at--817--1991Chr09:16846499..16846523 (25 bp)
ACTCGCGATTCGTATTTGCTTGGAA
LOC_Os09g27670
OsAffx.17937.1.S1_at--154--8191Chr09:16846520..16846544 (25 bp)
GGAAGCTATTACAGCCATTGCCTCT
LOC_Os09g27670
OsAffx.17937.1.S1_at--47--5731Chr09:16846547..16846571 (25 bp)
GACTCCGATCTGGTACATGTTTGCA
LOC_Os09g27670
Target Sequence 
ATGACTACCCTGATCGATCTGGATGGCGCTGTGTGGAACATGGACTACAGGGTGGGATTGGACGAGATATGGGCAGACGA
CGGCTACAAGCTAGCAAGCCGGGCTGACGCCGGGCAAGGTCCCCGCCATCGCGCTCGTCGACCCCAACAACCATGGCATA
CTCCACTTTCTACTAGACGGCATGATTTTTGCGGTGAACATGTGCGCCAGCGCCACCAAGAGCAGGGTCCTGCACTTCGA
GAAGTTTCTGGTGGGCGCTGGCGTCGACTCCTTGGAGAAGTACCAGAACTCGCGATTCGTATTTGCTTGGAAGCTATTAC
AGCCATTGCCTCTCCGACTCCGATCTGGTACATGTTTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17937.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis