Browse Element(s) Details


Os.50860.1.S1_at

Description gb:AK059044.1
DB_XREF= gi:32969062
TID=Os.50860.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50860 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-021-D07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-021-D07, full insert sequence.
FL= gb:AK059044.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g276802/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27650Os.5733.1.A1_s_at11/119+16821231..16824664Zinc finger, C2H2 type family protein, expressed
LOC_Os09g27660Os.20476.2.S1_a_at11/119+16827921..16837339ANTH domain containing protein, expressed
LOC_Os09g27660Os.57346.1.S1_at10/119+16827921..16837339ANTH domain containing protein, expressed
LOC_Os09g27660Os.20476.1.A1_at7/119+16827921..16837339ANTH domain containing protein, expressed
LOC_Os09g27660OsAffx.1705.1.S1_at1/119+16827921..16837339ANTH domain containing protein, expressed
LOC_Os09g27670OsAffx.17937.1.S1_at11/119+16845524..16846607hypothetical protein
LOC_Os09g27680Os.50860.1.S1_at2/119+16847165..16847464expressed protein
LOC_Os09g27690Os.8438.1.S1_at11/119+16851237..16853657expressed protein
LOC_Os09g27690OsAffx.30062.1.S1_at7/119+16851237..16853657expressed protein
LOC_Os09g27700Os.20136.1.S1_a_at11/119+16854329..16860063microtubule associated protein family protein, putative, expressed
LOC_Os09g27710OsAffx.17938.1.S1_at11/119+16866459..16867177hypothetical protein
LOC_Os09g27720OsAffx.17939.1.S1_at11/119+16869210..16869963hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50860.1.S1_at--510--9291Chr09:16847031..16847055 (25 bp)
TCCGTTTACCTCATTGCACATGTTT
NONE
Os.50860.1.S1_at--1007--7151Chr09:16847056..16847080 (25 bp)
GTCTCCCGTTGTTTCATACATAGTA
NONE
Os.50860.1.S1_at--1036--6811Chr09:16847137..16847161 (25 bp)
GTTTTTGTCCCCTTTTGATCAAGCA
NONE
Os.50860.1.S1_at--256--2931Chr09:16847207..16847231 (25 bp)
AAGGACTGTACTGCTGTGACCTCTG
LOC_Os09g27680
Os.50860.1.S1_at--1096--3331Chr09:16847241..16847265 (25 bp)
CACGACAATTTTTCACTGCTCAGTT
LOC_Os09g27680
Os.50860.1.S1_at--30--7131Chr09:16847491..16847515 (25 bp)
GTCATGTAATCCTAACTCCAGTCAG
NONE
Os.50860.1.S1_at--893--1151Chr09:16847510..16847534 (25 bp)
AGTCAGTTGCCTGCACACTGTGAAC
NONE
Os.50860.1.S1_at--19--5511Chr09:16847531..16847555 (25 bp)
GAACAGCTCGTTTAGTCACTTGACA
NONE
Os.50860.1.S1_at--868--9691Chr09:16847546..16847570 (25 bp)
TCACTTGACACATTCGGGCAGCAAC
NONE
Os.50860.1.S1_at--96--8591Chr09:16847588..16847612 (25 bp)
TGGTTATCCACTTCATGTACTCGCA
NONE
Os.50860.1.S1_at--642--751Chr09:16847602..16847626 (25 bp)
ATGTACTCGCAGTCTCACGGGTAGG
NONE
Target Sequence 
TCCGTTTACCTCATTGCACATGTTTGTCTCCCGTTGTTTCATACATAGTATACAGTATGAACCTGTGAGGTTGCATACTG
TAGTTAGGATGTGAACGTATATGATGGTTTTTGTCCCCTTTTGATCAAGCAGAGATGGACGAACACCAGAGTGGAAACTT
CAAGATCCAGGATATCAAGGACTGTACTGCTGTGACCTCTGCAGAAGCTGCACGACAATTTTTCACTGCTCAGTTGGAAG
ACATCCGCATGAAGAAAGGAACCCGCAAGGAGAAAGGAACCCGCCAGAAGAATGATGCAGCTGCTGCAAAGGAAGAGCGA
GCCATAGAAGTGGGGGCATCATCATCAGTGGAAGCTGTGGCTGCACAGGTGCAAGCAGCGGAAGAAACAAAGGCCATTCC
TCAAGGACTCCTTGCGCATGATGCCAAGGAGTAGTGACAGTTAGTTAGTCGTAGTTACTAGTCATGTAATCCTAACTCCA
GTCAGTTGCCTGCACACTGTGAACAGCTCGTTTAGTCACTTGACACATTCGGGCAGCAACAGCTTGCTGTCAGTTTCTGG
TTATCCACTTCATGTACTCGCAGTCTCACGGGTAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50860.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis