Browse Element(s) Details


OsAffx.1705.1.S1_at

Description gb:NM_184360.1
DB_XREF= gi:34895809
GEN=P0434B04.15
TID=OsAffx.1705.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0434B04.15 (P0434B04.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g411301/11hypothetical protein
LOC_Os09g276601/11ANTH domain containing protein, expressed
LOC_Os11g084701/11Heat shock cognate 70 kDa protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g41110Os.9585.1.S1_s_at11/1112+25429011..25429896Calmodulin, putative, expressed
LOC_Os12g41110Os.9585.1.S1_at11/1112+25429011..25429896Calmodulin, putative, expressed
LOC_Os12g41120OsAffx.7851.1.S1_at11/1112+25432148..25432603hypothetical protein
LOC_Os12g41130OsAffx.1705.1.S1_at1/1112+25449767..25450808hypothetical protein
LOC_Os12g41130Os.27131.1.S1_at1/1112+25449767..25450808hypothetical protein
LOC_Os12g41140Os.7037.1.A1_s_at7/1112+25454030..25460115expressed protein
LOC_Os12g41150NANA12+25465655..25466982retrotransposon, putative, centromere-specific
LOC_Os12g41160OsAffx.7853.1.S1_x_at11/1112+25470289..25473205IQ calmodulin-binding motif family protein, expressed
LOC_Os12g41160OsAffx.25518.1.S1_x_at2/1112+25470289..25473205IQ calmodulin-binding motif family protein, expressed
LOC_Os12g41170Os.53126.1.S1_at11/1112+25475014..25483324Root hair defective 3 GTP-binding protein containing protein, expressed
LOC_Os12g41170Os.54285.1.S1_at1/1112+25475014..25483324Root hair defective 3 GTP-binding protein containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0009408biological_processresponse to heat
GO:0009615biological_processresponse to virus
GO:0005829cellular_componentcytosol
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1705.1.S1_at--964--8011Chr01:2628446..2628470 (25 bp)
GGAGGACCACCCCTCGTGCTTGGAT
NONE
OsAffx.1705.1.S1_at--116--4291Chr01:2628486..2628510 (25 bp)
CCTCCCGTGTGGTAGCCATGACAAG
NONE
OsAffx.1705.1.S1_at--806--6971Chr01:2628497..2628521 (25 bp)
GTAGCCATGACAAGGCGGATGCGAT
NONE
OsAffx.1705.1.S1_at--372--2951Chr01:2628508..2628532 (25 bp)
AAGGCGGATGCGATGCCACTGCAAC
NONE
OsAffx.1705.1.S1_at--708--4451Chr01:2628682..2628706 (25 bp)
GCCTCTCCAAGTTAATGCGTGCTGC
NONE
OsAffx.1705.1.S1_at--491--611Chr01:2628696..2628720 (25 bp)
ATGCGTGCTGCATCAATGTGCCCTT
NONE
OsAffx.1705.1.S1_at--1137--1831Chr01:2628730..2628754 (25 bp)
ACGACCCCTTAGATTGAACTCTCGG
NONE
OsAffx.1705.1.S1_at--1141--7291Chr01:2628758..2628782 (25 bp)
GTGCTACTAACTGACGGTTTGCCTC
NONE
OsAffx.1705.1.S1_at--806--9611Chr01:2629029..2629053 (25 bp)
TCAAACCAACCACGTAGGTGCCACA
NONE
OsAffx.1705.1.S1_at--24--3574Chr07:20195228..20195252 (25 bp)
CATCATCCAAAACCGGGCACAATAC
NONE
OsAffx.1705.1.S1_at--1101--512Chr09:16832889..16832908 (20 bp)
ATCCGGTTTTATGAACTGAGGACGA
LOC_Os09g27660
Target Sequence 
GGAGGACCACCCCTCGTGCTTGGATCCATCTCCCTCCCTCCCTCCCGTGTGGTAGCCATGACAAGGCGGATGCGATGCCA
CTGCAACGAGGCAGCGGGCGGCGATGCGGTGGTGGCTGCTCTCGCTCGCCGCGACGGGCACCACCATCACCGCCGTCGCC
GCGCTGGTCGCCATCGCCCTCCACGTCTCCTCCTCCTTCGCCTCTGGCCCCGATTCCTCCTCCAGCGTGTCCTACCGCCT
CTCCAAGTTAATGCGTGCTGCATCAATGTGCCCTTCTCCGCGCCACGACCCCTTAGATTGAACTCTCGGGGTGTGCTACT
AACTGACGGTTTGCCTCCTCCTTGTTATCGCCGACGCCACAGCAGCCGCGGGAGGTCGGGGAGCTGCGCGCCACGTCAAT
GCCACATGGGACGAGAACCTAGTCAAACCAACCACGTAGGTGCCACATCATCCAAAACCGGGCACAATACTGCCGAGGGA
CCTCGTCTGCACGGTTTTGGTAAGTTGGGGATGTGTTGTATCCGGTTTTATGAACTGAGGACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1705.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis