Browse Element(s) Details


OsAffx.25518.1.S1_x_at

Description tigr:9631.m04199
TID=OsAffx.25518.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4358011/11IQ calmodulin-binding motif family protein, expressed
LOC_Os12g411602/11IQ calmodulin-binding motif family protein, expressed
LOC_Os10g284201/11IQ calmodulin-binding motif family protein, expressed
LOC_Os03g065701/11IQ calmodulin-binding motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g43560OsAffx.20313.1.S1_x_at1/113+24280308..24282571hypothetical protein
LOC_Os03g43564OsAffx.31174.4.S1_x_at1/113+24289586..24291763hypothetical protein
LOC_Os03g43570Os.17618.1.S1_at11/113+24295430..24298984UBX domain-containing protein 1, putative, expressed
LOC_Os03g43570Os.17618.2.S1_x_at11/113+24295430..24298984UBX domain-containing protein 1, putative, expressed
LOC_Os03g43580OsAffx.25518.1.S1_x_at11/113+24301697..24303205IQ calmodulin-binding motif family protein, expressed
LOC_Os03g43580OsAffx.7853.1.S1_x_at1/113+24301697..24303205IQ calmodulin-binding motif family protein, expressed
LOC_Os03g43580OsAffx.6794.1.S1_x_at1/113+24301697..24303205IQ calmodulin-binding motif family protein, expressed
LOC_Os03g43590Os.10813.1.S1_at11/113+24305830..24311483LSTK-1-like kinase, putative, expressed
LOC_Os03g43610OsAffx.19542.3.S1_x_at4/113+24325262..24330284retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g43610OsAffx.828.1.S1_x_at1/113+24325262..24330284retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25518.1.S1_x_at--741--5091Chr03:24302622..24302646 (25 bp)
GCACGCCGTCCAAGGTGGAGCTGTA
LOC_Os03g43580
OsAffx.25518.1.S1_x_at--497--3991Chr03:24302628..24302652 (25 bp)
CGTCCAAGGTGGAGCTGTACCAGAA
LOC_Os03g43580
OsAffx.25518.1.S1_x_at--773--5891Chr03:24302639..24302663 (25 bp)
GAGCTGTACCAGAAGGTGTCGCCGA
LOC_Os03g43580
OsAffx.25518.1.S1_x_at--571--6972Chr12:25472630..25472653 (24 bp)
GTACCAGAAGGTGTCGCCGACGCCG
LOC_Os12g41160
OsAffx.25518.1.S1_x_at--598--9851Chr03:24302699..24302723 (25 bp)
TACAGCGGCCGGTACGACGACTTCT
LOC_Os03g43580
OsAffx.25518.1.S1_x_at--1108--10551Chr03:24302825..24302849 (25 bp)
TTCTTCCCCAACTACATGGCGAACA
LOC_Os03g43580
OsAffx.25518.1.S1_x_at--853--2472Chr12:25472828..25472852 (25 bp)
AACACGGAGTCGTCGCGCGCCAAGG
LOC_Os12g41160
OsAffx.25518.1.S1_x_at--1109--9391Chr03:24302909..24302933 (25 bp)
TCGTCGTCCGCCAGCGAGGCGTCGT
LOC_Os03g43580
OsAffx.25518.1.S1_x_at--1137--6191Chr03:24302924..24302948 (25 bp)
GAGGCGTCGTCGGTGCGGTGGGAGA
LOC_Os03g43580
OsAffx.25518.1.S1_x_at--127--4071Chr03:24303090..24303114 (25 bp)
CGAGGCTGCCGGACCACGACAGCGA
LOC_Os03g43580
OsAffx.25518.1.S1_x_at--937--1693Chr10:14457077..14457176 (25 bp)
ACCACGACAGCGAGTGCGGGTCGAC
LOC_Os10g28420
Target Sequence 
GCACGCCGTCCAAGGTGGAGCTGTACCAGAAGGTGTCGCCGACGCCGTCGGCGCTGACGGACGCCAGCGCGCGGACGTAC
AGCGGCCGGTACGACGACTTCTCCTTCTCCACGGCGCGGAACAGCCCGTGGCACCACCACCACGCCTCCGACGCGCCGTG
CAAGCCGCATCACCCGCACCACGGCAACGGCGACCACCCGCTCTTCTTCCCCAACTACATGGCGAACACGGAGTCGTCGC
GCGCCAAGGCGCGGTCGCAGAGCGCGCCGCGGCAGCGCGCGTCGGTGTCGTCGTCCGCCAGCGAGGCGTCGTCGGTGCGG
TGGGAGAGGCAGGCGAGCGCCCGGCGCAGGGCGTCGCTGGAGGCGCAGGCGGCGTCGGCGCCACCCAACAAGTGCGGCGC
CGCCATGATGGCGCGCGTGCAGCGGTGCCCGTCGCAGGCGAGCGCGCCGGCGTCGTGCCCGTGGGGGTCGAGGCTGCCGG
ACCACGACAGCGAGTGCGGGTCGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25518.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis