Browse Element(s) Details


OsAffx.828.1.S1_x_at

Description gb:NM_192429.1
DB_XREF= gi:34911941
GEN=OSJNBb0006H05.35
TID=OsAffx.828.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBb0006H05.35 (OSJNBb0006H05.35), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g447206/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g447406/11transposon protein, putative, Mutator sub-class
LOC_Os12g164504/11retrotransposon protein, putative, unclassified
LOC_Os10g394802/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g321102/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g391501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g407501/11hypothetical protein
LOC_Os12g198701/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g553501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g221701/11hypothetical protein
LOC_Os03g013901/11transposon protein, putative, unclassified
LOC_Os05g154901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g356301/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g477301/11retrotransposon protein, putative, unclassified
LOC_Os08g107901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g191101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g232301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g470801/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g225401/11transposon protein, putative, unclassified
LOC_Os12g054501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g402001/11hypothetical protein
LOC_Os04g240701/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g123401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g048001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g016901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g436101/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g322801/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g210601/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g087761/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g44660NANA5+25889971..25891914retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g44670OsAffx.20354.1.S1_at1/115+25892744..25894283retrotransposon protein, putative, unclassified
LOC_Os05g44680NANA5+25897860..25898843retrotransposon protein, putative, unclassified
LOC_Os05g44690OsAffx.21870.2.S1_x_at11/115+25903738..25905076hypothetical protein
LOC_Os05g44690OsAffx.21870.3.S1_x_at11/115+25903738..25905076hypothetical protein
LOC_Os05g44700NANA5+25906259..25907928retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g44710OsAffx.21870.3.S1_x_at11/115+25910994..25914096hypothetical protein
LOC_Os05g44710OsAffx.21870.2.S1_x_at11/115+25910994..25914096hypothetical protein
LOC_Os05g44720OsAffx.828.1.S1_x_at6/115+25914753..25916504retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g44730OsAffx.447.1.S1_at7/115+25919056..25923606retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g44730OsAffx.22947.2.S1_x_at1/115+25919056..25923606retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g44730Os.52609.1.S1_at1/115+25919056..25923606retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g44740OsAffx.828.1.S1_x_at6/115+25924467..25930439transposon protein, putative, Mutator sub-class
LOC_Os05g44740OsAffx.20017.1.S1_at5/115+25924467..25930439transposon protein, putative, Mutator sub-class
LOC_Os05g44740Os.33601.3.S1_x_at3/115+25924467..25930439transposon protein, putative, Mutator sub-class
LOC_Os05g44740OsAffx.12505.2.S1_at3/115+25924467..25930439transposon protein, putative, Mutator sub-class
LOC_Os05g44740OsAffx.20631.1.S1_x_at2/115+25924467..25930439transposon protein, putative, Mutator sub-class
LOC_Os05g44740OsAffx.12505.1.S1_x_at1/115+25924467..25930439transposon protein, putative, Mutator sub-class
LOC_Os05g44750NANA5+25931406..25931809hypothetical protein
LOC_Os05g44760Os.3293.1.S1_at11/115+25934125..25939061Hexokinase 1, putative, expressed
LOC_Os05g44760Os.20973.1.S1_s_at11/115+25934125..25939061Hexokinase 1, putative, expressed
LOC_Os05g44770Os.10619.1.S1_at11/115+25939268..25942512Leucine Rich Repeat family protein, expressed
LOC_Os05g44770Os.10619.1.S2_at6/115+25939268..25942512Leucine Rich Repeat family protein, expressed
LOC_Os05g44770Os.11775.2.S1_x_at1/115+25939268..25942512Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.828.1.S1_x_at--180--84118Chr12:16177600..16177624 (25 bp)
GGCGCGCGCGCACGGTTGCCAGCGA
NONE
OsAffx.828.1.S1_x_at--659--4615Chr12:9415355..9415379 (25 bp)
GCGAGCGACCCTAGCGGCGACGCTA
NONE
OsAffx.828.1.S1_x_at--841--60114Chr10:20753092..20753116 (25 bp)
GAGAGGGAGACCGATCCTCACCGAG
LOC_Os10g39480
OsAffx.828.1.S1_x_at--498--976Chr12:9415460..9415484 (25 bp)
AGGAGCGACGGCGAACAGCAACGAT
NONE
OsAffx.828.1.S1_x_at--941--83111Chr12:16186292..16186316 (25 bp)
GGCTCCGGGAGGACCTAGAGAAAAG
NONE
OsAffx.828.1.S1_x_at--1143--8317Chr09:510306..510330 (25 bp)
ATGGACCACGGCGATCGGAAACCAT
NONE
OsAffx.828.1.S1_x_at--434--58330Chr12:9415564..9415587 (24 bp)
GACCACGGCGATCGGAAACCATGGC
NONE
OsAffx.828.1.S1_x_at--1151--61313Chr12:9415602..9415626 (25 bp)
GAGGTGGTGCTCACCCGTGCGCGAG
LOC_Os12g16450
OsAffx.828.1.S1_x_at--12--61326Chr12:9415632..9415656 (25 bp)
GAGGGCTCCGGCGACGAACTTCGAC
LOC_Os12g16450
OsAffx.828.1.S1_x_at--475--751100Chr12:9415675..9415699 (25 bp)
GTGGATCTCGGCCACGCGAATCGAA
LOC_Os12g16450
OsAffx.828.1.S1_x_at--292--79718Chr12:9415677..9415701 (25 bp)
GGATCTCGGCCACGCGAATCGAACG
LOC_Os12g16450
Target Sequence 
GGCGCGCGCGCACGGTTGCCAGCGACGGCAACCGGCGACGGGAGGCGGCGGCGGACGGCGCAAAGACGGCGGCGGCGGCC
GAAGCGGCGGCGCGAGCGACCCTAGCGGCGACGCTACGCGGCGGGCGGCGCGGCAAAGGGAGAGAGAGGAAGAGAGGGAG
ACCGATCCTCACCGAGGGGCTCGGCCGGCGCGAGGGAGGAGCGACGGCGAACAGCAACGATGAGAGACGGGAGGACGACG
GCGACGGGCTCCGGGAGGACCTAGAGAAAAGGTTGGGAGGGGTTAGAGAGAGGGAGATGGACCACGGCGATCGGAAACCA
TGGCCGACGGCGGCGGTGGAGGTGGTGCTCACCCGTGCGCGAGGGGGTGAGGGCTCCGGCGACGAACTTCGACGGAGGAG
GGGTGGACGGGGTGGATCTCGGCCACGCGAATCGAACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.828.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis