Browse Element(s) Details


Os.33601.3.S1_x_at

Description gb:NM_196765.1
DB_XREF= gi:37534889
TID=Os.33601.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.33601 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0077M12.7 (OSJNBa0077M12.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0068N06.17), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g213003/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g447403/11transposon protein, putative, Mutator sub-class
LOC_Os07g264103/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g271203/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g484302/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g387202/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g321302/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g080602/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g237702/11retrotransposon protein, putative, unclassified
LOC_Os03g386201/11hypothetical protein
LOC_Os07g260201/11hypothetical protein
LOC_Os04g028101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g429941/11hydrolase, alpha/beta fold family protein, expressed
LOC_Os11g342901/11retrotransposon protein, putative, unclassified
LOC_Os11g220101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g478701/11hypothetical protein
LOC_Os03g407601/11hypothetical protein
LOC_Os04g138901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g073701/11retrotransposon protein, putative, unclassified
LOC_Os12g054501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g011801/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g21240OsAffx.17094.1.S1_at10/118+12679595..12680504hypothetical protein
LOC_Os08g21250OsAffx.5885.1.S1_at11/118+12682219..12682986retrotransposon, putative, centromere-specific
LOC_Os08g21260NANA8+12690205..12690609retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g21280Os.52609.1.S1_at2/118+12693399..12697190retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g21280OsAffx.22947.2.S1_x_at1/118+12693399..12697190retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g21290Os.46715.1.S1_x_at2/118+12700347..12700895retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g21290Os.46715.1.S1_at1/118+12700347..12700895retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g21300Os.33601.3.S1_x_at3/118+12701822..12703610retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g21300Os.49936.2.A1_at1/118+12701822..12703610retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g21320OsAffx.5886.1.S1_at11/118+12704826..12705059hypothetical protein
LOC_Os08g21330Os.49203.1.S1_at11/118+12705751..12714144formamidopyrimidine-DNA glycosylase family protein, expressed
LOC_Os08g21350Os.5878.1.S1_at10/118+12719182..12727478cig3, putative, expressed
LOC_Os08g21350OsAffx.25413.1.S1_at1/118+12719182..12727478cig3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33601.3.S1_x_at--67--1191NONE
AGTAGAGGATGCGGGCGACTCCATT
NONE
Os.33601.3.S1_x_at--609--6177Chr07:13333628..13333947 (25 bp)
GAGGATGCGGGCGACTCCATTCCAC
NONE
Os.33601.3.S1_x_at--234--635100Chr12:24715002..24715023 (22 bp)
GATGCGGGCGACTCCATTCCACAGG
NONE
Os.33601.3.S1_x_at--168--46751Chr11:6042707..6042727 (21 bp)
GCGGGCGACTCCATTCCACAGGCTT
NONE
Os.33601.3.S1_x_at--554--5291Chr05:12724238..12724746 (25 bp)
GAAGGACTTCAACTCTGGCAACGGG
NONE
Os.33601.3.S1_x_at--174--937Chr05:12724240..12724748 (25 bp)
AGGACTTCAACTCTGGCAACGGGCA
NONE
Os.33601.3.S1_x_at--644--56911Chr11:20926931..20927451 (25 bp)
GACTTCAACTCTGGCAACGGGCAGC
NONE
Os.33601.3.S1_x_at--144--15Chr10:16076166..16076190 (25 bp)
GCCCCCCTTTTGTGCCGCGGTGAAT
NONE
Os.33601.3.S1_x_at--681--467167Chr12:16185047..16185071 (25 bp)
GCGGTGAATCCGGAAGCCGATCAAC
NONE
Os.33601.3.S1_x_at--340--77775Chr12:7584063..7584394 (25 bp)
GGTGAATCCGGAAGCCGATCAACTG
NONE
Os.33601.3.S1_x_at--275--8197Chr10:16076193..16076217 (25 bp)
GGAAGCCGATCAACTGGACACCCCG
NONE
Target Sequence 
AGTAGAGGATGCGGGCGACTCCATTCCACAGGCTTCCTTGACGGCAGCGACGAAACCAACCTCTTCGAGACATCTTCAAC
TGAGAAGGACTTCAACTCTGGCAACGGGCAGCCCCCCTTTTGTGCCGCGGTGAATCCGGAAGCCGATCAACTGGACACCC
CG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33601.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis