Browse Element(s) Details


OsAffx.5885.1.S1_at

Description tigr:9636.m02080
TID=OsAffx.5885.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2125011/11retrotransposon, putative, centromere-specific
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g21210NANA8+12656395..12660454transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g21220NANA8+12661798..12667953retrotransposon protein, putative, unclassified
LOC_Os08g21230NANA8+12668569..12671874retrotransposon protein, putative, unclassified
LOC_Os08g21240OsAffx.17094.1.S1_at10/118+12679595..12680504hypothetical protein
LOC_Os08g21250OsAffx.5885.1.S1_at11/118+12682219..12682986retrotransposon, putative, centromere-specific
LOC_Os08g21260NANA8+12690205..12690609retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g21280Os.52609.1.S1_at2/118+12693399..12697190retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g21280OsAffx.22947.2.S1_x_at1/118+12693399..12697190retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g21290Os.46715.1.S1_x_at2/118+12700347..12700895retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g21290Os.46715.1.S1_at1/118+12700347..12700895retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g21300Os.33601.3.S1_x_at3/118+12701822..12703610retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g21300Os.49936.2.A1_at1/118+12701822..12703610retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g21320OsAffx.5886.1.S1_at11/118+12704826..12705059hypothetical protein
LOC_Os08g21330Os.49203.1.S1_at11/118+12705751..12714144formamidopyrimidine-DNA glycosylase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5885.1.S1_at--897--9191Chr08:12682891..12682915 (25 bp)
TCCAATTCGGCTACCTGTTACATTA
LOC_Os08g21250
OsAffx.5885.1.S1_at--443--4371Chr08:12682890..12682914 (25 bp)
CCAATTCGGCTACCTGTTACATTAT
LOC_Os08g21250
OsAffx.5885.1.S1_at--294--3131Chr08:12682888..12682912 (25 bp)
AATTCGGCTACCTGTTACATTATCG
LOC_Os08g21250
OsAffx.5885.1.S1_at--325--10611Chr08:12682886..12682910 (25 bp)
TTCGGCTACCTGTTACATTATCGAC
LOC_Os08g21250
OsAffx.5885.1.S1_at--731--3931Chr08:12682884..12682908 (25 bp)
CGGCTACCTGTTACATTATCGACTT
LOC_Os08g21250
OsAffx.5885.1.S1_at--916--8291Chr08:12682883..12682907 (25 bp)
GGCTACCTGTTACATTATCGACTTC
LOC_Os08g21250
OsAffx.5885.1.S1_at--652--3711Chr08:12682881..12682905 (25 bp)
CTACCTGTTACATTATCGACTTCAA
LOC_Os08g21250
OsAffx.5885.1.S1_at--560--9951Chr08:12682880..12682904 (25 bp)
TACCTGTTACATTATCGACTTCAAA
LOC_Os08g21250
OsAffx.5885.1.S1_at--364--4151Chr08:12682878..12682902 (25 bp)
CCTGTTACATTATCGACTTCAAACG
LOC_Os08g21250
OsAffx.5885.1.S1_at--1081--9871Chr08:12682844..12682868 (25 bp)
TATGCAAAACAAACTCCGTTTTCAG
LOC_Os08g21250
OsAffx.5885.1.S1_at--341--9011Chr08:12682842..12682866 (25 bp)
TGCAAAACAAACTCCGTTTTCAGCC
LOC_Os08g21250
Target Sequence 
TCCAATTCGGCTACCTGTTACATTATCGACTTCAAACGGCCGCCAAATATGCAAAACAAACTCCGTTTTCAGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5885.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis