Browse Element(s) Details


OsAffx.17094.1.S1_at

Description tigr:9636.m02079
TID=OsAffx.17094.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2124010/11hypothetical protein
LOC_Os10g249801/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g21200OsAffx.18924.2.S1_x_at5/118+12651718..12655225transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g21200OsAffx.19842.1.S1_at2/118+12651718..12655225transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g21200OsAffx.18924.3.S1_at1/118+12651718..12655225transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g21200OsAffx.19421.1.S1_at1/118+12651718..12655225transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g21210NANA8+12656395..12660454transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g21220NANA8+12661798..12667953retrotransposon protein, putative, unclassified
LOC_Os08g21230NANA8+12668569..12671874retrotransposon protein, putative, unclassified
LOC_Os08g21240OsAffx.17094.1.S1_at10/118+12679595..12680504hypothetical protein
LOC_Os08g21250OsAffx.5885.1.S1_at11/118+12682219..12682986retrotransposon, putative, centromere-specific
LOC_Os08g21260NANA8+12690205..12690609retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g21280Os.52609.1.S1_at2/118+12693399..12697190retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g21280OsAffx.22947.2.S1_x_at1/118+12693399..12697190retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g21290Os.46715.1.S1_x_at2/118+12700347..12700895retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g21290Os.46715.1.S1_at1/118+12700347..12700895retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g21300Os.33601.3.S1_x_at3/118+12701822..12703610retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g21300Os.49936.2.A1_at1/118+12701822..12703610retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g21320OsAffx.5886.1.S1_at11/118+12704826..12705059hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17094.1.S1_at--546--8131Chr08:12680449..12680473 (25 bp)
GGACATCATCGTGGCTTCACGGGCA
LOC_Os08g21240
OsAffx.17094.1.S1_at--1070--1911Chr08:12680431..12680455 (25 bp)
ACGGGCAGCGTGATGACCTCCCTCG
LOC_Os08g21240
OsAffx.17094.1.S1_at--990--9311Chr08:12680413..12680437 (25 bp)
TCCCTCGCCCGATGATGTGTTTGGT
LOC_Os08g21240
OsAffx.17094.1.S1_at--830--1111Chr08:12680364..12680388 (25 bp)
AGTGTTCCCGGTGGCTTTGATGAGA
LOC_Os08g21240
OsAffx.17094.1.S1_at--1029--6291Chr08:12680346..12680370 (25 bp)
GATGAGACCTCGTTTGTCGGGCACA
LOC_Os08g21240
OsAffx.17094.1.S1_at--586--7191Chr08:12680331..12680355 (25 bp)
GTCGGGCACAGTTGATAGCGTCCAT
LOC_Os08g21240
OsAffx.17094.1.S1_at--1030--291Chr08:12680317..12680341 (25 bp)
ATAGCGTCCATGATGTCGCGACGAC
LOC_Os08g21240
OsAffx.17094.1.S1_at--311--7311NONE
GTGCTCCGGCGAGGAATGCTTAGAC
NONE
OsAffx.17094.1.S1_at--505--632Chr11:11114283..11114317 (25 bp)
ATGCTTAGACCAACTAGCTCACCAT
NONE
OsAffx.17094.1.S1_at--428--4832Chr06:17186260..17186283 (24 bp)
GCTCACCATGGGATTCACTTTAATA
NONE
OsAffx.17094.1.S1_at--1083--10172Chr10:12526642..12527147 (25 bp)
TATAGTCCTTAATGTTTATGATGCT
LOC_Os10g24980
Target Sequence 
GGACATCATCGTGGCTTCACGGGCAGCGTGATGACCTCCCTCGCCCGATGATGTGTTTGGTTGATATGGGCGCTGGTGGC
TTGGTAGTGTTCCCGGTGGCTTTGATGAGACCTCGTTTGTCGGGCACAGTTGATAGCGTCCATGATGTCGCGACGACGTG
CTCCGGCGAGGAATGCTTAGACCAACTAGCTCACCATGGGATTCACTTTAATATAGTCCTTAATGTTTATGATGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17094.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis