Browse Element(s) Details


OsAffx.18924.2.S1_x_at

Description tigr:9637.m03320
TID=OsAffx.18924.2
CNT=6
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g474458/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g389407/11hypothetical protein
LOC_Os11g146807/11hypothetical protein
LOC_Os11g218807/11hypothetical protein
LOC_Os06g233407/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g290807/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g130206/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g353306/11hypothetical protein
LOC_Os06g306106/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g268906/11hypothetical protein
LOC_Os01g339605/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g212005/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g280305/11transposon protein, putative, unclassified
LOC_Os02g179605/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g291604/11hypothetical protein
LOC_Os10g026403/11hypothetical protein
LOC_Os07g261603/11hypothetical protein
LOC_Os11g267001/11hypothetical protein
LOC_Os05g157501/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g47443Os.45976.1.S1_x_at1/1111+28059342..28063737transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g47444Os.35344.3.S1_x_at9/1111+28074396..28080488Transposable element protein, putative, MuDR
LOC_Os11g47444Os.35344.18.S1_x_at7/1111+28074396..28080488Transposable element protein, putative, MuDR
LOC_Os11g47444OsAffx.22940.5.S1_x_at3/1111+28074396..28080488Transposable element protein, putative, MuDR
LOC_Os11g47445OsAffx.18924.2.S1_x_at8/1111+28083491..28086431transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g47445OsAffx.18924.4.S1_at3/1111+28083491..28086431transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g47445OsAffx.19842.1.S1_at2/1111+28083491..28086431transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g47446OsAffx.19421.2.S1_at11/1111+28088270..28092704transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g47446OsAffx.28898.1.S1_at2/1111+28088270..28092704transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g47446OsAffx.31287.1.S1_at1/1111+28088270..28092704transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g47446OsAffx.3348.1.S1_at1/1111+28088270..28092704transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g47446OsAffx.20497.1.S1_at1/1111+28088270..28092704transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g47446OsAffx.22387.1.S1_at1/1111+28088270..28092704transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g47447Os.55690.1.S1_at11/1111+28095508..28097914Disease resistance protein RPP8, putative, expressed
LOC_Os11g47448OsAffx.31070.2.S1_at1/1111+28104505..28106482hypothetical protein
LOC_Os11g47449OsAffx.13772.1.S1_x_at1/1111+28109841..28110805hypothetical protein
LOC_Os11g47449OsAffx.13772.1.S1_at1/1111+28109841..28110805hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18924.2.S1_x_at--1119--2693Chr11:28084379..28084403 (25 bp)
AAGCTTACATAGCACAAAGGCATCA
LOC_Os11g47445
OsAffx.18924.2.S1_x_at--167--45910Chr12:7217403..7217427 (25 bp)
GCGCTTGAATCTACGCAGGACAAGG
LOC_Os12g13020
OsAffx.18924.2.S1_x_at--253--56111Chr12:7217421..7217445 (25 bp)
GACAAGGAGTGTGTTTATGCCCCAT
LOC_Os12g13020
OsAffx.18924.2.S1_x_at--918--74111Chr12:7217431..7217455 (25 bp)
GTGTTTATGCCCCATATGCCTTTGA
LOC_Os12g13020
OsAffx.18924.2.S1_x_at--941--3576Chr11:8263991..8264086 (25 bp)
CATATGCCTTTGACGACCATTGGAT
LOC_Os11g14680
OsAffx.18924.2.S1_x_at--27--1759Chr12:7217529..7217553 (25 bp)
ACCATTGGATAGTCTTTCTTCTCTA
LOC_Os12g13020
OsAffx.18924.2.S1_x_at--477--71512Chr12:7217540..7217564 (25 bp)
GTCTTTCTTCTCTATCCAAAGTACA
LOC_Os12g13020
OsAffx.18924.2.S1_x_at--636--53310Chr11:8264115..8264181 (25 bp)
GAAGTCATCGTCTTGGATTCTCTCG
LOC_Os11g14680
OsAffx.18924.2.S1_x_at--330--517Chr08:12654539..12654563 (25 bp)
ATCGTCTTGGATTCTCTCGACAAAG
LOC_Os08g21200
OsAffx.18924.2.S1_x_at--221--24310Chr11:8264292..8264316 (25 bp)
AAAACTCAAGAGAACGCATATTCGT
LOC_Os11g14680
OsAffx.18924.2.S1_x_at--777--21112Chr12:7218140..7218164 (25 bp)
ACATGTGCTACTTCATCCACCGTGA
LOC_Os12g13020
Target Sequence 
AAGCTTACATAGCACAAAGGCATCANGAAAAGNTGCTCGATGTCGCTACGTACGTAGCTATNGCGCTTGAATCTACGCAG
GACAAGGAGTGTGTTTATGCCCCATATGCCTTTGACGACCATTGGATAGTCTTTCTTCTCTATCCAAAGTACAATGAAGT
CATCGTCTTGGATTCTCTCGACAAAGATAGCAANACCTATCAGGAATTTCTAAGAATTATCGATCTTGCATTTAAAAGNN
GTATTANCAGCGAGGCGNACAACGCAAAAACTCAAGAGAACGCATATTCGTCCNCAATAAGTGGCCGNNNNTGTCACAAG
CAACCGGTGGGAANANTANTATGCGGATATTANTNTTNTGAGTTCCTAAGGGTTAATGGGAAATATTGTGCGAATTANGA
CGAGCTTCCAAAATTCCCCANNTNNGAAAGAGAGCTCNATGATANATCCATTNANNACATTCAGNNGGACATGTGCTACT
TCATCCACCGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18924.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis