Browse Element(s) Details


OsAffx.20497.1.S1_at

Description gb:NM_195845.1
DB_XREF= gi:37533049
TID=OsAffx.20497.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative transposable element (OSJNBa0050M22.1), mRNA.
PROD=putative transposable element
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1981011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g339703/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g291003/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g211702/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g280002/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g179602/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g233202/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g219201/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g339801/11hypothetical protein
LOC_Os11g474461/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g19330NANA10+9528379..9528894hypothetical protein
LOC_Os10g19334Os.12308.1.S1_at11/1110+9529766..9536654large secreted protein, putative, expressed
LOC_Os10g19338NANA10+9538524..9542812retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g19342NANA10+9547055..9549128IQ calmodulin-binding motif family protein
LOC_Os10g19810OsAffx.20497.1.S1_at11/1110+9550634..9551206transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g19820OsAffx.18303.1.S1_at10/1110+9552396..9554233hypothetical protein
LOC_Os10g19830NANA10+9555484..9558788transposon protein, putative, Mariner sub-class, expressed
LOC_Os10g19850OsAffx.30454.1.S1_x_at11/1110+9564460..9565919hypothetical protein
LOC_Os10g19850OsAffx.30454.1.S1_at11/1110+9564460..9565919hypothetical protein
LOC_Os10g19860Os.22677.1.S1_a_at11/1110+9575925..9586322myosin, putative, expressed
LOC_Os10g19860Os.22677.3.S1_x_at11/1110+9575925..9586322myosin, putative, expressed
LOC_Os10g19860OsAffx.13489.1.S1_at2/1110+9575925..9586322myosin, putative, expressed
LOC_Os10g19860Os.7672.1.S1_at1/1110+9575925..9586322myosin, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20497.1.S1_at--704--251Chr10:9551150..9551174 (25 bp)
ATATCGTGCGTCATACACTGAAGGA
LOC_Os10g19810
OsAffx.20497.1.S1_at--42--6672Chr10:9551125..9551149 (25 bp)
GTTGACATATTCATGAAAGCTGCTA
LOC_Os10g19810
OsAffx.20497.1.S1_at--314--5279Chr11:8244534..8244554 (21 bp)
GAATGCTGCATCTAAGAAGACGAAG
NONE
OsAffx.20497.1.S1_at--834--10438Chr08:12640965..12640989 (25 bp)
TTAGATGTCCATGCGTGCACTGCAA
LOC_Os08g21170
OsAffx.20497.1.S1_at--487--8573Chr06:13618128..13618147 (20 bp)
TGGATCAATCCATCTGTAATCGAGC
LOC_Os06g23320
OsAffx.20497.1.S1_at--721--5051Chr10:9551006..9551030 (25 bp)
GCAGCACCTGGTGACGCATGGATTT
LOC_Os10g19810
OsAffx.20497.1.S1_at--1150--1831Chr10:9550993..9551017 (25 bp)
ACGCATGGATTTGGTGCTCGCTACA
LOC_Os10g19810
OsAffx.20497.1.S1_at--524--9091Chr10:9550979..9551003 (25 bp)
TGCTCGCTACACAACTTGGTCACAT
LOC_Os10g19810
OsAffx.20497.1.S1_at--27--2831Chr10:9550932..9550956 (25 bp)
AAGTTCCCAACCAGGCGACAGTTTG
LOC_Os10g19810
OsAffx.20497.1.S1_at--976--4051Chr10:9550886..9550910 (25 bp)
CGAGGATTTCATGGTAGTAGTAGTA
LOC_Os10g19810
OsAffx.20497.1.S1_at--277--111Chr10:9550692..9550716 (25 bp)
ATTCGGAAGAGATTTTGCGCCATGC
LOC_Os10g19810
Target Sequence 
ATATCGTGCGTCATACACTGAAGGAGTTGACATATTCATGAAAGCTGCTAAGAAGAATGCTGCATCTAAGAAGACGAAGG
AAATTAGATGTCCATGCGTGCACTGCAAAAATCAGAAAATTTGGATCAATCCATCTGTAATCGAGCAGCACCTGGTGACG
CATGGATTTGGTGCTCGCTACACAACTTGGTCACATCATGGAGAAATCCCAAGCAAACAAGTTCCCAACCAGGCGACAGT
TTGGGATGAAGTGTTCAACTTGGACGAGGATTTCATGGTAGTAGTAGTAGTAGTAGAAGAAGAAGAAGAAGAAGAAGAAG
AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAACCTGTTGATGATGATGATGTTGGCGACAATGGTCAG
CACAGTACAGTTGATGATGTCGATGAAGGTAATGTCAGCGTAAATGATGGTAATTTTGATTCGGAAGAGATTTTGCGCCA
TGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20497.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis