Browse Element(s) Details


OsAffx.13489.1.S1_at

Description tigr:9631.m05336
TID=OsAffx.13489.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g198602/11myosin, putative, expressed
LOC_Os02g391401/11bHLH transcription factor GBOF-1, putative, expressed
LOC_Os01g430601/11expressed protein
LOC_Os03g548041/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g19810OsAffx.20497.1.S1_at11/1110+9550634..9551206transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g19820OsAffx.18303.1.S1_at10/1110+9552396..9554233hypothetical protein
LOC_Os10g19830NANA10+9555484..9558788transposon protein, putative, Mariner sub-class, expressed
LOC_Os10g19850OsAffx.30454.1.S1_x_at11/1110+9564460..9565919hypothetical protein
LOC_Os10g19850OsAffx.30454.1.S1_at11/1110+9564460..9565919hypothetical protein
LOC_Os10g19860Os.22677.1.S1_a_at11/1110+9575925..9586322myosin, putative, expressed
LOC_Os10g19860Os.22677.3.S1_x_at11/1110+9575925..9586322myosin, putative, expressed
LOC_Os10g19860OsAffx.13489.1.S1_at2/1110+9575925..9586322myosin, putative, expressed
LOC_Os10g19860Os.7672.1.S1_at1/1110+9575925..9586322myosin, putative, expressed
LOC_Os10g19880Os.23313.3.S1_at11/1110+9589513..9600042large secreted protein, putative, expressed
LOC_Os10g19880Os.23313.4.S1_x_at11/1110+9589513..9600042large secreted protein, putative, expressed
LOC_Os10g19880OsAffx.30595.1.S1_at1/1110+9589513..9600042large secreted protein, putative, expressed
LOC_Os10g19890OsAffx.8261.1.S1_at11/1110+9603207..9606845retrotransposon protein, putative, LINE subclass

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Gene Ontology Classification
GO idTypeName
GO:0030048biological_processactin filament-based movement
GO:0045449biological_processregulation of transcription
GO:0016459cellular_componentmyosin
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0003774molecular_functionmotor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13489.1.S1_at--740--3931Chr03:31097474..31097498 (25 bp)
CGGCGAGGTCGTGGTGAGCTCATCG
LOC_Os03g54804
OsAffx.13489.1.S1_at--577--9691NONE
TCAAAGACGCGCCTCCGCTATAATT
NONE
OsAffx.13489.1.S1_at--290--2331NONE
AAAGACGCGCCTCCGCTATAATTTT
NONE
OsAffx.13489.1.S1_at--196--5811Chr03:31096614..31096633 (20 bp)
GACGCGCCTCCGCTATAATTTTATC
NONE
OsAffx.13489.1.S1_at--926--4531Chr03:31096611..31096633 (23 bp)
GCGCCTCCGCTATAATTTTATCCTG
NONE
OsAffx.13489.1.S1_at--560--4456Chr10:9585106..9585126 (21 bp)
GCCTCCGCTATAATTTTATCCTGGC
LOC_Os10g19860
OsAffx.13489.1.S1_at--584--48711Chr12:501899..501919 (21 bp)
GCTATAATTTTATCCTGGCTCTGCC
NONE
OsAffx.13489.1.S1_at--217--1711Chr03:31096568..31096592 (25 bp)
ACCACACACACCTCCGTGAATGTGT
NONE
OsAffx.13489.1.S1_at--1140--2151Chr03:31096561..31096585 (25 bp)
ACACCTCCGTGAATGTGTCCCTTAA
NONE
OsAffx.13489.1.S1_at--1067--1512Chr03:31096559..31096583 (25 bp)
ACCTCCGTGAATGTGTCCCTTAACA
NONE
OsAffx.13489.1.S1_at--139--5293Chr02:23644047..23644066 (20 bp)
GAATGTGTCCCTTAACACATGCTCT
LOC_Os02g39140
Target Sequence 
CGGCGAGGTCGTGGTGAGCTCATCGCAGCGGTGGACGGCGGGTCCGGCTGCGGCTCGGCGCGGAGCAGCGCGAGGATGCC
CAGTGGCGGTGAAGATTCAAAGACGCGCCTCCGCTATAATTTTATCCTGGCTCTGCCACTGCACAACACCACACACACCT
CCGTGAATGTGTCCCTTAACACATGCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13489.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis