Browse Element(s) Details


Os.23313.3.S1_at

Description gb:AK101675.1
DB_XREF= gi:32986884
TID=Os.23313.3
CNT=22
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.23313 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0050M22.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033058F11, full insert sequence.
FL= gb:AK101675.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1988011/11large secreted protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g19850OsAffx.30454.1.S1_x_at11/1110+9564460..9565919hypothetical protein
LOC_Os10g19850OsAffx.30454.1.S1_at11/1110+9564460..9565919hypothetical protein
LOC_Os10g19860Os.22677.1.S1_a_at11/1110+9575925..9586322myosin, putative, expressed
LOC_Os10g19860Os.22677.3.S1_x_at11/1110+9575925..9586322myosin, putative, expressed
LOC_Os10g19860OsAffx.13489.1.S1_at2/1110+9575925..9586322myosin, putative, expressed
LOC_Os10g19860Os.7672.1.S1_at1/1110+9575925..9586322myosin, putative, expressed
LOC_Os10g19880Os.23313.3.S1_at11/1110+9589513..9600042large secreted protein, putative, expressed
LOC_Os10g19880Os.23313.4.S1_x_at11/1110+9589513..9600042large secreted protein, putative, expressed
LOC_Os10g19880OsAffx.30595.1.S1_at1/1110+9589513..9600042large secreted protein, putative, expressed
LOC_Os10g19890OsAffx.8261.1.S1_at11/1110+9603207..9606845retrotransposon protein, putative, LINE subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23313.3.S1_at--1152--8311Chr10:9589930..9589954 (25 bp)
GGCTCTCTGAGAATGTACAGTTGCT
LOC_Os10g19880
Os.23313.3.S1_at--579--2271Chr10:9589839..9589863 (25 bp)
AAATCTCGTTAGTTCTTGCACATAT
LOC_Os10g19880
Os.23313.3.S1_at--801--5111Chr10:9589822..9589846 (25 bp)
GCACATATCGAACTTGTTTCTCTGC
LOC_Os10g19880
Os.23313.3.S1_at--841--211Chr10:9589797..9589821 (25 bp)
ATTTGTTTCAGCATTCCCTTGAGCA
LOC_Os10g19880
Os.23313.3.S1_at--979--2671Chr10:9589761..9589785 (25 bp)
AAGCGTCATGCGGATTTCATTGTGT
LOC_Os10g19880
Os.23313.3.S1_at--1015--1231Chr10:9589733..9589757 (25 bp)
AGTTGAGTCTGTGTGTTGGTGTAAA
LOC_Os10g19880
Os.23313.3.S1_at--376--271Chr10:9589673..9589697 (25 bp)
ATATGTGCTACTTTCTAGTGCGTTA
LOC_Os10g19880
Os.23313.3.S1_at--316--2111Chr10:9589634..9589658 (25 bp)
ACATGGTTTCTATTGTAACTGCTAG
LOC_Os10g19880
Os.23313.3.S1_at--129--1991Chr10:9589617..9589641 (25 bp)
ACTGCTAGAGCTGAATCGGTGTTTT
LOC_Os10g19880
Os.23313.3.S1_at--816--6811Chr10:9589597..9589621 (25 bp)
GTTTTATTACCAGTCATAGGCCTTA
LOC_Os10g19880
Os.23313.3.S1_at--250--10131Chr10:9589522..9589546 (25 bp)
TATGCAATCAACATAGTACCCCTCT
LOC_Os10g19880
Target Sequence 
GGCTCTCTGAGAATGTACAGTTGCTGGTTTTGAAAGGGGAAGCTAACTCGGGGGTAACTCGCCAAATCTCCCGAGCCANC
TGCCAATAAATAAATCTCGTTAGTTCTTGCACATATCGAACTTGTTTCTCTGCATTTGTTTCAGCATTCCCTTGAGCAAC
TATGCAAATAAGCGTCATGCGGATTTCATTGTGTACTAGTTGAGTCTGTGTGTTGGTGTAAATTTTGGTGTTGAAATAAC
CTATAAATGCACACAAAATATGTGCTACTTTCTAGTGCGTTAGTAGCAAGAATACAACATGGTTTCTATTGTAACTGCTA
GAGCTGAATCGGTGTTTTATTACCAGTCATAGGCCTTATGTGCGGGGAAACANCNNNANGAATGAGTACATATATTACTG
AAGANCATTATGCAATCAACATAGTACCCCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23313.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis