Browse Element(s) Details


OsAffx.30595.1.S1_at

Description tigr:9638.m02550
TID=OsAffx.30595.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2980010/11expressed protein
LOC_Os10g198801/11large secreted protein, putative, expressed
LOC_Os07g342901/11expressed protein
LOC_Os07g131601/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g29750OsAffx.20311.1.S1_x_at11/1110+15137561..15139606BTB/POZ domain containing protein
LOC_Os10g29750OsAffx.20311.2.S1_at11/1110+15137561..15139606BTB/POZ domain containing protein
LOC_Os10g29760OsAffx.20314.1.S1_at10/1110+15143270..15144280expressed protein
LOC_Os10g29760OsAffx.30600.1.S1_at1/1110+15143270..15144280expressed protein
LOC_Os10g29774OsAffx.20313.1.S1_x_at10/1110+15151818..15152707NA
LOC_Os10g29790OsAffx.20312.4.S1_x_at11/1110+15156785..15157972BTB/POZ domain containing protein
LOC_Os10g29790OsAffx.20312.4.S1_at11/1110+15156785..15157972BTB/POZ domain containing protein
LOC_Os10g29790OsAffx.20312.1.S1_x_at6/1110+15156785..15157972BTB/POZ domain containing protein
LOC_Os10g29790OsAffx.20312.3.S1_x_at4/1110+15156785..15157972BTB/POZ domain containing protein
LOC_Os10g29800OsAffx.30595.1.S1_at10/1110+15162420..15164392expressed protein
LOC_Os10g29810OsAffx.30599.1.S1_at11/1110+15167451..15169920BTB/POZ domain containing protein
LOC_Os10g29810OsAffx.30599.2.S1_x_at9/1110+15167451..15169920BTB/POZ domain containing protein
LOC_Os10g29810OsAffx.20312.4.S1_x_at1/1110+15167451..15169920BTB/POZ domain containing protein
LOC_Os10g29810OsAffx.20312.1.S1_x_at1/1110+15167451..15169920BTB/POZ domain containing protein
LOC_Os10g29820OsAffx.20312.3.S1_x_at9/1110+15170858..15171802SnRNP protein, putative
LOC_Os10g29820OsAffx.20312.3.S1_at7/1110+15170858..15171802SnRNP protein, putative
LOC_Os10g29820OsAffx.20312.4.S1_x_at1/1110+15170858..15171802SnRNP protein, putative
LOC_Os10g29830OsAffx.20312.2.S1_x_at10/1110+15172986..15174799hypothetical protein
LOC_Os10g29830OsAffx.20312.2.S1_at10/1110+15172986..15174799hypothetical protein
LOC_Os10g29840OsAffx.20311.1.S1_x_at11/1110+15177174..15178253BTB/POZ domain containing protein
LOC_Os10g29840OsAffx.20311.2.S1_at1/1110+15177174..15178253BTB/POZ domain containing protein
LOC_Os10g29850Os.46868.1.S1_x_at8/1110+15185425..15186492BTB/POZ domain containing protein
LOC_Os10g29850Os.46868.3.S1_x_at6/1110+15185425..15186492BTB/POZ domain containing protein
LOC_Os10g29860Os.46868.2.S1_x_at11/1110+15188239..15189285hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30595.1.S1_at--212--5131Chr10:15162458..15162482 (25 bp)
GCAAAAATTCTCCTGGCCTGAAAAC
LOC_Os10g29800
OsAffx.30595.1.S1_at--1090--92Chr10:15162464..15162488 (25 bp)
ATTCTCCTGGCCTGAAAACAGCATA
LOC_Os10g29800
OsAffx.30595.1.S1_at--36--4971Chr10:15162484..15162508 (25 bp)
GCATAACAAGCTGCGTCGTGTGCAC
LOC_Os10g29800
OsAffx.30595.1.S1_at--23--8691NONE
TGTGCACGCAGCAAGGAGGCTACCC
NONE
OsAffx.30595.1.S1_at--1019--5012Chr10:15163749..15163773 (25 bp)
GCAGCAAGGAGGCTACCCCGATTTA
LOC_Os10g29800
OsAffx.30595.1.S1_at--563--4231Chr10:15163766..15163790 (25 bp)
CCGATTTACGCGGATCTGGCGACGG
LOC_Os10g29800
OsAffx.30595.1.S1_at--178--7991Chr10:15164149..15164173 (25 bp)
GGATGCGCCGCTACCGCCCATTGGG
LOC_Os10g29800
OsAffx.30595.1.S1_at--198--811Chr10:15164203..15164227 (25 bp)
ATGGTGGTCCCAGCACCACTGGGAA
LOC_Os10g29800
OsAffx.30595.1.S1_at--1077--672Chr10:15164270..15164294 (25 bp)
ATGACGGCGCTTGGATCTACGGGAC
LOC_Os10g29800
OsAffx.30595.1.S1_at--959--8551Chr10:15164281..15164305 (25 bp)
TGGATCTACGGGACTACGGCTGCAG
LOC_Os10g29800
OsAffx.30595.1.S1_at--730--3971Chr10:15164289..15164313 (25 bp)
CGGGACTACGGCTGCAGGTCTTCAT
LOC_Os10g29800
Target Sequence 
GCAAAAATTCTCCTGGCCTGAAAACAGCATAACAAGCTGCGTCGTGTGCACGCAGCAAGGAGGCTACCCCGATTTACGCG
GATCTGGCGACGGTGCGGCGGTGGCAGCCATGCGGGCGAGGCCATCCCGAGCGGTGGCCGATGACGGCGGGAGGGACAGC
AGCAACAAGAGGAGGCGGTGGCACCGCCGACACAAGCAAGTGTCATCGACGGGCTACGACGGCAACAAACATCCACCATG
CGCGGATGCGCCGCTACCGCCCATTGGGCCTTCTACCCTCCTTCCAAGCAACTCCCTATGGTGGTCCCAGCACCACTGGG
AATCTGGGATGGCCTCCGGTCCGTCGGTGGAGGCTGCAGACGAGATGACGGCGCTTGGATCTACGGGACTACGGCTGCAG
GTCTTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30595.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis