Browse Element(s) Details


OsAffx.20313.1.S1_x_at

Description gb:NM_196644.1
DB_XREF= gi:37534647
TID=OsAffx.20313.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0012D19.5), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2977410/11
LOC_Os01g150806/11hypothetical protein
LOC_Os02g154206/11hypothetical protein
LOC_Os05g037004/11hypothetical protein
LOC_Os06g356904/11hypothetical protein
LOC_Os01g217304/11hypothetical protein
LOC_Os08g329503/11hypothetical protein
LOC_Os08g334103/11hypothetical protein
LOC_Os04g406902/11hypothetical protein
LOC_Os03g435601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g29730OsAffx.8098.1.S1_at11/1110+15129500..15130174retrotransposon protein, putative, LINE subclass
LOC_Os10g29740OsAffx.20315.1.S1_at11/1110+15133411..15136752BTB/POZ domain containing protein
LOC_Os10g29740Os.46868.1.S1_x_at4/1110+15133411..15136752BTB/POZ domain containing protein
LOC_Os10g29740Os.46868.3.S1_x_at2/1110+15133411..15136752BTB/POZ domain containing protein
LOC_Os10g29750OsAffx.20311.1.S1_x_at11/1110+15137561..15139606BTB/POZ domain containing protein
LOC_Os10g29750OsAffx.20311.2.S1_at11/1110+15137561..15139606BTB/POZ domain containing protein
LOC_Os10g29760OsAffx.20314.1.S1_at10/1110+15143270..15144280expressed protein
LOC_Os10g29760OsAffx.30600.1.S1_at1/1110+15143270..15144280expressed protein
LOC_Os10g29774OsAffx.20313.1.S1_x_at10/1110+15151818..15152707NA
LOC_Os10g29790OsAffx.20312.4.S1_x_at11/1110+15156785..15157972BTB/POZ domain containing protein
LOC_Os10g29790OsAffx.20312.4.S1_at11/1110+15156785..15157972BTB/POZ domain containing protein
LOC_Os10g29790OsAffx.20312.1.S1_x_at6/1110+15156785..15157972BTB/POZ domain containing protein
LOC_Os10g29790OsAffx.20312.3.S1_x_at4/1110+15156785..15157972BTB/POZ domain containing protein
LOC_Os10g29800OsAffx.30595.1.S1_at10/1110+15162420..15164392expressed protein
LOC_Os10g29810OsAffx.30599.1.S1_at11/1110+15167451..15169920BTB/POZ domain containing protein
LOC_Os10g29810OsAffx.30599.2.S1_x_at9/1110+15167451..15169920BTB/POZ domain containing protein
LOC_Os10g29810OsAffx.20312.4.S1_x_at1/1110+15167451..15169920BTB/POZ domain containing protein
LOC_Os10g29810OsAffx.20312.1.S1_x_at1/1110+15167451..15169920BTB/POZ domain containing protein
LOC_Os10g29820OsAffx.20312.3.S1_x_at9/1110+15170858..15171802SnRNP protein, putative
LOC_Os10g29820OsAffx.20312.3.S1_at7/1110+15170858..15171802SnRNP protein, putative
LOC_Os10g29820OsAffx.20312.4.S1_x_at1/1110+15170858..15171802SnRNP protein, putative
LOC_Os10g29830OsAffx.20312.2.S1_x_at10/1110+15172986..15174799hypothetical protein
LOC_Os10g29830OsAffx.20312.2.S1_at10/1110+15172986..15174799hypothetical protein
LOC_Os10g29840OsAffx.20311.1.S1_x_at11/1110+15177174..15178253BTB/POZ domain containing protein
LOC_Os10g29840OsAffx.20311.2.S1_at1/1110+15177174..15178253BTB/POZ domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20313.1.S1_x_at--646--4057Chr11:20904329..20904353 (25 bp)
CGATGACTTCGGCTGTGGAGATCTA
NONE
OsAffx.20313.1.S1_x_at--431--6317Chr11:20904330..20904354 (25 bp)
GATGACTTCGGCTGTGGAGATCTAA
NONE
OsAffx.20313.1.S1_x_at--12--695Chr11:20904331..20904355 (25 bp)
ATGACTTCGGCTGTGGAGATCTAAC
NONE
OsAffx.20313.1.S1_x_at--384--56928Chr11:20904333..20904356 (24 bp)
GACTTCGGCTGTGGAGATCTAACCC
NONE
OsAffx.20313.1.S1_x_at--428--20520Chr07:7871780..7871804 (25 bp)
ACTTCGGCTGTGGAGATCTAACCCG
NONE
OsAffx.20313.1.S1_x_at--312--36521Chr08:20313760..20313786 (25 bp)
CTTCGGCTGTGGAGATCTAACCCGA
LOC_Os08g32950
OsAffx.20313.1.S1_x_at--445--106123Chr08:20313761..20313787 (25 bp)
TTCGGCTGTGGAGATCTAACCCGAC
LOC_Os08g32950
OsAffx.20313.1.S1_x_at--798--94319Chr08:20313762..20313787 (24 bp)
TCGGCTGTGGAGATCTAACCCGACC
LOC_Os08g32950
OsAffx.20313.1.S1_x_at--976--39316Chr07:11895315..11895341 (25 bp)
CGGCTGTGGAGATCTAACCCGACCG
NONE
OsAffx.20313.1.S1_x_at--340--9211Chr10:15152177..15152648 (25 bp)
TCTAACCCGACCGAAATATATCCGG
LOC_Os10g29774
OsAffx.20313.1.S1_x_at--597--9771NONE
TAACCCGACCGAAATATATCCGGCA
NONE
Target Sequence 
CGATGACTTCGGCTGTGGAGATCTAACCCGACCGAAATATATCCGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20313.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis