Browse Element(s) Details


OsAffx.30600.1.S1_at

Description tigr:9638.m02566
TID=OsAffx.30600.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g299609/11hypothetical protein
LOC_Os10g297601/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g29880OsAffx.30596.1.S1_at11/1110+15194900..15196610hypothetical protein
LOC_Os10g29900OsAffx.30598.1.S1_at11/1110+15202274..15202684hypothetical protein
LOC_Os10g29920OsAffx.30599.2.S1_x_at11/1110+15209851..15211058BTB/POZ domain containing protein
LOC_Os10g29920OsAffx.20312.4.S1_x_at1/1110+15209851..15211058BTB/POZ domain containing protein
LOC_Os10g29920OsAffx.20312.1.S1_x_at1/1110+15209851..15211058BTB/POZ domain containing protein
LOC_Os10g29920Os.53704.1.S1_x_at1/1110+15209851..15211058BTB/POZ domain containing protein
LOC_Os10g29930NANA10+15211347..15213308hypothetical protein
LOC_Os10g29940NANA10+15215528..15215812hypothetical protein
LOC_Os10g29950OsAffx.20312.1.S1_at11/1110+15217123..15218292BTB/POZ domain containing protein
LOC_Os10g29950OsAffx.20312.1.S1_x_at11/1110+15217123..15218292BTB/POZ domain containing protein
LOC_Os10g29950OsAffx.20312.4.S1_x_at5/1110+15217123..15218292BTB/POZ domain containing protein
LOC_Os10g29950OsAffx.20312.2.S1_x_at2/1110+15217123..15218292BTB/POZ domain containing protein
LOC_Os10g29960OsAffx.30600.1.S1_at9/1110+15219463..15221542hypothetical protein
LOC_Os10g29970OsAffx.19542.3.S1_x_at5/1110+15223170..15227110retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g29980Os.27691.1.S1_x_at1/1110+15232224..15236318retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g29990Os.27691.2.S1_x_at1/1110+15236570..15237747retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g29990Os.27691.1.S1_x_at1/1110+15236570..15237747retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g30000OsAffx.135.1.S1_at11/1110+15241580..15243472transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30600.1.S1_at--133--7611Chr10:15219442..15219466 (25 bp)
GGGCACCTGGCAGCGAGGTCCATGG
NONE
OsAffx.30600.1.S1_at--31--7251Chr10:15219532..15219556 (25 bp)
GTCCGCAGGGAAGGCGACGAATCCA
LOC_Os10g29960
OsAffx.30600.1.S1_at--1138--6131Chr10:15219595..15219619 (25 bp)
GAGGTGGTGTTCAGCGCCGACGCGG
LOC_Os10g29960
OsAffx.30600.1.S1_at--1111--5792Chr10:15219613..15219637 (25 bp)
GACGCGGTTGGAGGTGCGGGTCCAC
LOC_Os10g29960
OsAffx.30600.1.S1_at--101--2751Chr10:15219668..15219692 (25 bp)
AAGAAGAGCCAGACATGACGGCACG
LOC_Os10g29960
OsAffx.30600.1.S1_at--60--7691NONE
GGGTTCAGAGGCTGGAGCCCTACAA
NONE
OsAffx.30600.1.S1_at--303--4711Chr10:15221393..15221417 (25 bp)
GCTGGAGCCCTACAAGAAGAACCGG
LOC_Os10g29960
OsAffx.30600.1.S1_at--521--5051Chr10:15221431..15221455 (25 bp)
GCAGCTGCACGGGACGGCGTACATC
LOC_Os10g29960
OsAffx.30600.1.S1_at--446--5731Chr10:15221443..15221467 (25 bp)
GACGGCGTACATCGGGTTAATTTCT
LOC_Os10g29960
OsAffx.30600.1.S1_at--157--3131Chr10:15221461..15221485 (25 bp)
AATTTCTGACTACTTACCGTTGAGG
LOC_Os10g29960
OsAffx.30600.1.S1_at--1076--8891Chr10:15221467..15221491 (25 bp)
TGACTACTTACCGTTGAGGAACCGG
LOC_Os10g29960
Target Sequence 
GGGCACCTGGCAGCGAGGTCCATGGGGGAAGAGCCAGCTGATGGCGCGGTTATAGGAGAGGCCATCAGTGGCGAAGCCGG
TGTCGACGAGGTCCGCAGGGAAGGCGACGAATCCAGGCGGAGACGGTGGGAAAGAGGCGAGCAGTGCCGCACGGAGGTGG
TGTTCAGCGCCGACGCGGTTGGAGGTGCGGGTCCACCGCGATGCCGTGGGGTTGGGGAGCAGGGCGAAGAAGAGCCAGAC
ATGACGGCACGGGGTTCAGAGGCTGGAGCCCTACAAGAAGAACCGGGGAAGCAGGCTGAGCAGCTGCACGGGACGGCGTA
CATCGGGTTAATTTCTGACTACTTACCGTTGAGGAACCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30600.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis