Browse Element(s) Details


OsAffx.30598.1.S1_at

Description tigr:9638.m02560
TID=OsAffx.30598.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2990011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g29840OsAffx.20311.1.S1_x_at11/1110+15177174..15178253BTB/POZ domain containing protein
LOC_Os10g29840OsAffx.20311.2.S1_at1/1110+15177174..15178253BTB/POZ domain containing protein
LOC_Os10g29850Os.46868.1.S1_x_at8/1110+15185425..15186492BTB/POZ domain containing protein
LOC_Os10g29850Os.46868.3.S1_x_at6/1110+15185425..15186492BTB/POZ domain containing protein
LOC_Os10g29860Os.46868.2.S1_x_at11/1110+15188239..15189285hypothetical protein
LOC_Os10g29870NANA10+15191955..15192440expressed protein
LOC_Os10g29880OsAffx.30596.1.S1_at11/1110+15194900..15196610hypothetical protein
LOC_Os10g29900OsAffx.30598.1.S1_at11/1110+15202274..15202684hypothetical protein
LOC_Os10g29920OsAffx.30599.2.S1_x_at11/1110+15209851..15211058BTB/POZ domain containing protein
LOC_Os10g29920OsAffx.20312.4.S1_x_at1/1110+15209851..15211058BTB/POZ domain containing protein
LOC_Os10g29920OsAffx.20312.1.S1_x_at1/1110+15209851..15211058BTB/POZ domain containing protein
LOC_Os10g29920Os.53704.1.S1_x_at1/1110+15209851..15211058BTB/POZ domain containing protein
LOC_Os10g29930NANA10+15211347..15213308hypothetical protein
LOC_Os10g29940NANA10+15215528..15215812hypothetical protein
LOC_Os10g29950OsAffx.20312.1.S1_at11/1110+15217123..15218292BTB/POZ domain containing protein
LOC_Os10g29950OsAffx.20312.1.S1_x_at11/1110+15217123..15218292BTB/POZ domain containing protein
LOC_Os10g29950OsAffx.20312.4.S1_x_at5/1110+15217123..15218292BTB/POZ domain containing protein
LOC_Os10g29950OsAffx.20312.2.S1_x_at2/1110+15217123..15218292BTB/POZ domain containing protein
LOC_Os10g29960OsAffx.30600.1.S1_at9/1110+15219463..15221542hypothetical protein
LOC_Os10g29970OsAffx.19542.3.S1_x_at5/1110+15223170..15227110retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30598.1.S1_at--312--4071Chr10:15202609..15202633 (25 bp)
CGAGATCAGTCCAAAGAAATTAAGA
LOC_Os10g29900
OsAffx.30598.1.S1_at--946--5651Chr10:15202552..15202576 (25 bp)
GACAGGTCGACAGCAGTGGCAGCCA
LOC_Os10g29900
OsAffx.30598.1.S1_at--259--8071Chr10:15202463..15202487 (25 bp)
GGAGCAGGTGCCTCGGCCTGACCAT
LOC_Os10g29900
OsAffx.30598.1.S1_at--265--9191Chr10:15202455..15202479 (25 bp)
TGCCTCGGCCTGACCATGAGGCGGC
LOC_Os10g29900
OsAffx.30598.1.S1_at--792--8071Chr10:15202424..15202448 (25 bp)
GGAGCTAGTGCTTGTCCACGCCATG
LOC_Os10g29900
OsAffx.30598.1.S1_at--377--4871Chr10:15202421..15202445 (25 bp)
GCTAGTGCTTGTCCACGCCATGGAG
LOC_Os10g29900
OsAffx.30598.1.S1_at--85--1131Chr10:15202418..15202442 (25 bp)
AGTGCTTGTCCACGCCATGGAGCCG
LOC_Os10g29900
OsAffx.30598.1.S1_at--140--3491Chr10:15202365..15202389 (25 bp)
CAGGCCAGTCAGTCAGTCGAGACGG
LOC_Os10g29900
OsAffx.30598.1.S1_at--230--8191Chr10:15202340..15202364 (25 bp)
GGAAGCCAATGCTCGGCTTTCTCAA
LOC_Os10g29900
OsAffx.30598.1.S1_at--715--3011Chr10:15202333..15202357 (25 bp)
AATGCTCGGCTTTCTCAACGGTGGG
LOC_Os10g29900
OsAffx.30598.1.S1_at--404--7371Chr10:15202305..15202329 (25 bp)
GTGACTGCTTACGGGTGTTCGCGCA
LOC_Os10g29900
Target Sequence 
CGAGATCAGTCCAAAGAAATTAAGAATTCGCAGATGAAGGTGCTTGTGGCGGTGGACGACAGGTCGACAGCAGTGGCAGC
CACCGCGCGCTGGCCTGGGTGCTCGACCACCTCTTCTTCCCCCGCCACCGGCGACGGCGGCGAGGAGGAGCAGGTGCCTC
GGCCTGACCATGAGGCGGCGGCGCCGGAGCTAGTGCTTGTCCACGCCATGGAGCCGCTCCACCACGTCATGTTCCCCGTC
GGCCCAGGCCAGTCAGTCAGTCGAGACGGGGAAGCCAATGCTCGGCTTTCTCAACGGTGGGGGTGTGACTGCTTACGGGT
GTTCGCGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30598.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis