Browse Element(s) Details


Os.53704.1.S1_x_at

Description gb:AK099313.1
DB_XREF= gi:32984522
TID=Os.53704.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53704 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023144L21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023144L21, full insert sequence.
FL= gb:AK099313.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4890011/11Fasciclin domain containing protein, expressed
LOC_Os10g299201/11BTB/POZ domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48870Os.11036.1.S1_at11/115+27951182..27956618Auxin response factor 3, putative, expressed
LOC_Os05g48880Os.9568.1.S1_at11/115+27956918..27959423expressed protein
LOC_Os05g48890OsAffx.15160.1.S1_at11/115+27964097..27965043Fasciclin domain containing protein, expressed
LOC_Os05g48890OsAffx.15160.1.S1_s_at11/115+27964097..27965043Fasciclin domain containing protein, expressed
LOC_Os05g48900Os.53704.1.S1_x_at11/115+27968486..27969669Fasciclin domain containing protein, expressed
LOC_Os05g48910OsAffx.21756.3.S1_x_at5/115+27973247..27979813retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g48910Os.13704.1.S1_x_at1/115+27973247..27979813retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g48910OsAffx.21756.2.S1_x_at1/115+27973247..27979813retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g48910OsAffx.20387.1.S1_x_at1/115+27973247..27979813retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g48920NANA5+27980193..27980846hypothetical protein
LOC_Os05g48930Os.9829.1.S1_at11/115+27984566..27985298Glutaredoxin-like family protein, expressed
LOC_Os05g48940OsAffx.15162.1.S1_at11/115+27989520..27993210expressed protein
LOC_Os05g48950NANA5+27994109..27995255expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53704.1.S1_x_at--574--9492Chr05:27969073..27969097 (25 bp)
TCTCCACCGTCGTCAGCAAGGACTT
LOC_Os05g48900
Os.53704.1.S1_x_at--93--4431Chr05:27969191..27969215 (25 bp)
GCCGTCCAAGTCCAAGACCAAGAAG
LOC_Os05g48900
Os.53704.1.S1_x_at--711--5371Chr05:27969212..27969236 (25 bp)
GAAGCACAAGAAGTCCGCCGGGATC
LOC_Os05g48900
Os.53704.1.S1_x_at--827--4511Chr05:27969360..27969384 (25 bp)
GCCGCCCTCTAAGCTAAGGAGACGA
LOC_Os05g48900
Os.53704.1.S1_x_at--973--5771Chr05:27969389..27969413 (25 bp)
GACGACGAACAAATGCATCGCCCAT
LOC_Os05g48900
Os.53704.1.S1_x_at--254--4991Chr05:27969414..27969438 (25 bp)
GCATGCCGTATGCACGATGACTGAA
LOC_Os05g48900
Os.53704.1.S1_x_at--1063--6111Chr05:27969442..27969466 (25 bp)
GAGTGGTGAACCGAATCCGAATCCG
LOC_Os05g48900
Os.53704.1.S1_x_at--5--531Chr05:27969472..27969496 (25 bp)
ATCGAGATCGATTGAACCGTGTACC
LOC_Os05g48900
Os.53704.1.S1_x_at--16--1791Chr05:27969487..27969511 (25 bp)
ACCGTGTACCGATATTGTTGTGCTG
LOC_Os05g48900
Os.53704.1.S1_x_at--978--8811Chr05:27969502..27969526 (25 bp)
TGTTGTGCTGCTCTGTATGTCCATC
LOC_Os05g48900
Os.53704.1.S1_x_at--538--10111Chr05:27969517..27969541 (25 bp)
TATGTCCATCGGCTTTATTCTTTCT
LOC_Os05g48900
Target Sequence 
TCTCCACCGTCGTCAGCAAGGACTTCCCCCTCGCCGTCTACTCCGTCGACAAGGTGCCGCTCCCCTACGAGCTGTTCGGC
CCCAAGCCGCCCACGCCCGCGCCGGCGCCGGCGCCCGCGCCGTCCAAGTCCAAGACCAAGAAGCACAAGAAGTCCGCCGG
GATCGCCGAGCCGCCCGTCGCCGACGACGCCTCCGCCGACGACACCACCAAGAAGGCCGCCGCGCCCGCCACCGCCGTCT
CCAGGTGGGTCGTCGCCGCCGCCGGTGTCTTGGCCGGCGCCATTCTCGCCGCCCTCTAAGCTAAGGAGACGACGACGACG
ACGAACAAATGCATCGCCCATGCATGCCGTATGCACGATGACTGAACTGGAGTGGTGAACCGAATCCGAATCCGAATTGA
TCGAGATCGATTGAACCGTGTACCGATATTGTTGTGCTGCTCTGTATGTCCATCGGCTTTATTCTTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53704.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis