Browse Element(s) Details


Os.11036.1.S1_at

Description gb:AB071290.1
DB_XREF= gi:19352032
GEN=OsETTIN1
TID=Os.11036.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.11036 (NCBI UniGene Cluster)
DEF=Oryza sativa OsETTIN1 mRNA for Arabidopsis ETTIN-like protein 1, complete cds.
PROD=Arabidopsis ETTIN-like protein 1
FL= gb:AB071290.1 gb:AK062170.1 gb:AK099793.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4887011/11Auxin response factor 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48860Os.56989.1.S1_at11/115+27926242..27927335Guanylate-binding protein, N-terminal domain containing protein, expressed
LOC_Os05g48870Os.11036.1.S1_at11/115+27951182..27956618Auxin response factor 3, putative, expressed
LOC_Os05g48880Os.9568.1.S1_at11/115+27956918..27959423expressed protein
LOC_Os05g48890OsAffx.15160.1.S1_at11/115+27964097..27965043Fasciclin domain containing protein, expressed
LOC_Os05g48890OsAffx.15160.1.S1_s_at11/115+27964097..27965043Fasciclin domain containing protein, expressed
LOC_Os05g48900Os.53704.1.S1_x_at11/115+27968486..27969669Fasciclin domain containing protein, expressed
LOC_Os05g48910OsAffx.21756.3.S1_x_at5/115+27973247..27979813retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g48910Os.13704.1.S1_x_at1/115+27973247..27979813retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g48910OsAffx.21756.2.S1_x_at1/115+27973247..27979813retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g48910OsAffx.20387.1.S1_x_at1/115+27973247..27979813retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g48920NANA5+27980193..27980846hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009733biological_processresponse to auxin stimulus
GO:0009850biological_processauxin metabolism
GO:0009911biological_processpositive regulation of flower development
GO:0010047biological_processfruit dehiscence
GO:0010150biological_processleaf senescence
GO:0010158biological_processabaxial cell fate specification
GO:0010227biological_processfloral organ abscission
GO:0045892biological_processnegative regulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11036.1.S1_at--611--5171Chr05:27955851..27955875 (25 bp)
GCAAGTGCCAAAATCCCTGGGCAAT
LOC_Os05g48870
Os.11036.1.S1_at--286--7611Chr05:27955869..27955889 (21 bp)
GGGCAATAGTTGTGCTACCGTTCAT
LOC_Os05g48870
Os.11036.1.S1_at--529--9951Chr05:27955960..27955980 (21 bp)
TACCGTTCATGAGCAAAGGCCTGTT
LOC_Os05g48870
Os.11036.1.S1_at--94--6591Chr05:27956073..27956183 (25 bp)
GATTGCTTCCAACCACATATTTTGC
LOC_Os05g48870
Os.11036.1.S1_at--311--1311Chr05:27956253..27956277 (25 bp)
AGATGTAGGCGTTGGAGCACTTATC
LOC_Os05g48870
Os.11036.1.S1_at--93--8691Chr05:27956279..27956303 (25 bp)
TGTGACATAGTACCTAGCTGCTCGT
LOC_Os05g48870
Os.11036.1.S1_at--420--9411Chr05:27956300..27956324 (25 bp)
TCGTCTGCATTTGTTGCCTCTGCAA
LOC_Os05g48870
Os.11036.1.S1_at--122--5151Chr05:27956321..27956345 (25 bp)
GCAACTTTAACTGTCAGCGGCATTT
LOC_Os05g48870
Os.11036.1.S1_at--980--4211Chr05:27956350..27956374 (25 bp)
CCGCTGGAACCATCTAAGTACGTGT
LOC_Os05g48870
Os.11036.1.S1_at--1066--6131Chr05:27956406..27956430 (25 bp)
GAGGGTGCTGGTACTGTTAGAACAT
LOC_Os05g48870
Os.11036.1.S1_at--1070--6951Chr05:27956443..27956467 (25 bp)
GTAGCATGCTTTGATCTTACGTGAT
LOC_Os05g48870
Target Sequence 
GCAAGTGCCAAAATCCCTGGGCAATAGTTGTGCTACCGTTCATGAGCAAAGGCCTGTTGTTGGCAGGGTGATTGATATTT
CAACTATGGATATGATGATCTGATNTATGAGCTGGATTTGCAAAATTATCTGGAGGTGAAGTAACACTAGGATTGCTTCC
AACCACATATTTTGCTGTGGATCTCCAGATGGTGGCCGAGTATCAGGGAGATGGAGGGACTGATGATTCTGATATTTTTA
TCTTAGATGTAGGCGTTGGAGCACTTATCATGTGACATAGTACCTAGCTGCTCGTCTGCATTTGTTGCCTCTGCAACTTT
AACTGTCAGCGGCATTTGTCGCCGCTGGAACCATCTAAGTACGTGTTTATAAGCTGTAAGCTATGACAAGCGCATTAGAG
GGTGCTGGTACTGTTAGAACATTAATTAATGTCAGTAGCATGCTTTGATCTTACGTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11036.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis