Browse Element(s) Details


OsAffx.15160.1.S1_s_at

Description tigr:9633.m04579
TID=OsAffx.15160.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Fasciclin domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4889011/11Fasciclin domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48870Os.11036.1.S1_at11/115+27951182..27956618Auxin response factor 3, putative, expressed
LOC_Os05g48880Os.9568.1.S1_at11/115+27956918..27959423expressed protein
LOC_Os05g48890OsAffx.15160.1.S1_at11/115+27964097..27965043Fasciclin domain containing protein, expressed
LOC_Os05g48890OsAffx.15160.1.S1_s_at11/115+27964097..27965043Fasciclin domain containing protein, expressed
LOC_Os05g48900Os.53704.1.S1_x_at11/115+27968486..27969669Fasciclin domain containing protein, expressed
LOC_Os05g48910OsAffx.21756.3.S1_x_at5/115+27973247..27979813retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g48910Os.13704.1.S1_x_at1/115+27973247..27979813retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g48910OsAffx.21756.2.S1_x_at1/115+27973247..27979813retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g48910OsAffx.20387.1.S1_x_at1/115+27973247..27979813retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g48920NANA5+27980193..27980846hypothetical protein
LOC_Os05g48930Os.9829.1.S1_at11/115+27984566..27985298Glutaredoxin-like family protein, expressed
LOC_Os05g48940OsAffx.15162.1.S1_at11/115+27989520..27993210expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15160.1.S1_s_at--553--4711Chr05:27964844..27964868 (25 bp)
GCTGGCCGCCGCTTGCCTCTTGTAA
LOC_Os05g48890
OsAffx.15160.1.S1_s_at--517--671Chr05:27964870..27964894 (25 bp)
ATGAGAAATTCGTGTCGGTGCATAT
LOC_Os05g48890
OsAffx.15160.1.S1_s_at--571--3151Chr05:27964876..27964900 (25 bp)
AATTCGTGTCGGTGCATATGAGATC
LOC_Os05g48890
OsAffx.15160.1.S1_s_at--128--9431Chr05:27964879..27964903 (25 bp)
TCGTGTCGGTGCATATGAGATCAGA
LOC_Os05g48890
OsAffx.15160.1.S1_s_at--805--7771Chr05:27964886..27964910 (25 bp)
GGTGCATATGAGATCAGAGGCTACT
LOC_Os05g48890
OsAffx.15160.1.S1_s_at--705--8891Chr05:27964894..27964918 (25 bp)
TGAGATCAGAGGCTACTACTGGCTG
LOC_Os05g48890
OsAffx.15160.1.S1_s_at--35--1331Chr05:27964901..27964925 (25 bp)
AGAGGCTACTACTGGCTGAGTGCAT
LOC_Os05g48890
OsAffx.15160.1.S1_s_at--207--8311Chr05:27964904..27964928 (25 bp)
GGCTACTACTGGCTGAGTGCATGAT
LOC_Os05g48890
OsAffx.15160.1.S1_s_at--1085--9891Chr05:27964907..27964931 (25 bp)
TACTACTGGCTGAGTGCATGATGCA
LOC_Os05g48890
OsAffx.15160.1.S1_s_at--644--7331Chr05:27964920..27964944 (25 bp)
GTGCATGATGCATTTCAAGAGTAGT
LOC_Os05g48890
OsAffx.15160.1.S1_s_at--1--9071Chr05:27964928..27964952 (25 bp)
TGCATTTCAAGAGTAGTTCTTGCTG
LOC_Os05g48890
Target Sequence 
GCTGGCCGCCGCTTGCCTCTTGTAAGATGAGAAATTCGTGTCGGTGCATATGAGATCAGAGGCTACTACTGGCTGAGTGC
ATGATGCATTTCAAGAGTAGTTCTTGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15160.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis