Browse Element(s) Details


Os.9829.1.S1_at

Description gb:AK062897.1
DB_XREF= gi:32972915
TID=Os.9829.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.9829 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-108-E10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-108-E10, full insert sequence.
FL= gb:AK062897.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4893011/11Glutaredoxin-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48890OsAffx.15160.1.S1_at11/115+27964097..27965043Fasciclin domain containing protein, expressed
LOC_Os05g48890OsAffx.15160.1.S1_s_at11/115+27964097..27965043Fasciclin domain containing protein, expressed
LOC_Os05g48900Os.53704.1.S1_x_at11/115+27968486..27969669Fasciclin domain containing protein, expressed
LOC_Os05g48910OsAffx.21756.3.S1_x_at5/115+27973247..27979813retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g48910Os.13704.1.S1_x_at1/115+27973247..27979813retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g48910OsAffx.21756.2.S1_x_at1/115+27973247..27979813retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g48910OsAffx.20387.1.S1_x_at1/115+27973247..27979813retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g48920NANA5+27980193..27980846hypothetical protein
LOC_Os05g48930Os.9829.1.S1_at11/115+27984566..27985298Glutaredoxin-like family protein, expressed
LOC_Os05g48940OsAffx.15162.1.S1_at11/115+27989520..27993210expressed protein
LOC_Os05g48950NANA5+27994109..27995255expressed protein
LOC_Os05g48960Os.8092.1.S1_at11/115+27996940..27999619Splicing factor U2AF 35 kDa subunit, putative, expressed
LOC_Os05g48970Os.11684.1.S1_at11/115+28001850..28009148Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g48980Os.9217.1.S1_at11/115+28009572..28011297Ras-related protein Rab11B, putative, expressed
LOC_Os05g48980Os.57489.1.S1_x_at1/115+28009572..28011297Ras-related protein Rab11B, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0009735biological_processresponse to cytokinin stimulus
GO:0048441biological_processpetal development
GO:0048448biological_processstamen morphogenesis
GO:0048451biological_processpetal formation
GO:0048453biological_processsepal formation
GO:0048455biological_processstamen formation
GO:0005489molecular_functionelectron transporter activity
GO:0030508molecular_functionthiol-disulfide exchange intermediate activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9829.1.S1_at--678--3251Chr05:27985013..27985037 (25 bp)
CAACGCAGTAGCGATCAAGCTGTTT
LOC_Os05g48930
Os.9829.1.S1_at--749--1631Chr05:27985022..27985046 (25 bp)
AGCGATCAAGCTGTTTTCCTTTTTT
LOC_Os05g48930
Os.9829.1.S1_at--642--9491Chr05:27985058..27985082 (25 bp)
TCTCCTATTAGGTTCAAATCATCTG
LOC_Os05g48930
Os.9829.1.S1_at--1055--9691Chr05:27985071..27985095 (25 bp)
TCAAATCATCTGATGCTTTTAGCTT
LOC_Os05g48930
Os.9829.1.S1_at--323--7591Chr05:27985122..27985146 (25 bp)
GGTGTTGTAATTAGATAGGACGAAA
LOC_Os05g48930
Os.9829.1.S1_at--332--6051Chr05:27985135..27985159 (25 bp)
GATAGGACGAAAAACTTGAATTCTT
LOC_Os05g48930
Os.9829.1.S1_at--117--5971Chr05:27985185..27985209 (25 bp)
GAGAAGTGTGTGTCCGTTAACGCTA
LOC_Os05g48930
Os.9829.1.S1_at--935--8651Chr05:27985191..27985215 (25 bp)
TGTGTGTCCGTTAACGCTACTGTAC
LOC_Os05g48930
Os.9829.1.S1_at--590--7251Chr05:27985196..27985220 (25 bp)
GTCCGTTAACGCTACTGTACTTAAT
LOC_Os05g48930
Os.9829.1.S1_at--657--4851Chr05:27985206..27985230 (25 bp)
GCTACTGTACTTAATTACCTTGTAA
LOC_Os05g48930
Os.9829.1.S1_at--557--4291Chr05:27985237..27985261 (25 bp)
CCTATACCTATTTTCGACCATGTAA
LOC_Os05g48930
Target Sequence 
CAACGCAGTAGCGATCAAGCTGTTTTCCTTTTTTTTTTTCTTTTTCTCTCCTATTAGGTTCAAATCATCTGATGCTTTTA
GCTTCTTTTTTTTTTCATGGCATTAATAATGGTGTTGTAATTAGATAGGACGAAAAACTTGAATTCTTTTAGGATTTTAA
TAAGGATGATTAGGAGAAGTGTGTGTCCGTTAACGCTACTGTACTTAATTACCTTGTAACTAGTNCCTATACCTATTTTC
GACCATGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9829.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis