Browse Element(s) Details

Os.57489.1.S1_x_at

Description

gb:D17779.1
DB_XREF= gi:455506
TID=Os.57489.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.57489 (NCBI UniGene Cluster)
UG_TITLE=Rice mRNA for ras-related GTP-binding protein, partial sequence
DEF=Rice mRNA for ras-related GTP-binding protein, partial sequence.
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g35814	5/11	Ras-related protein RIC2, putative, expressed
LOC_Os09g15790	1/11	Ras-related protein Rab11B, putative, expressed
LOC_Os05g44070	1/11	Ras-related protein RIC2, putative, expressed
LOC_Os05g48980	1/11	Ras-related protein Rab11B, putative, expressed
LOC_Os01g54590	1/11	Ras-related protein RIC2, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g35780	Os.46785.2.S1_x_at	2/11	6	+	20878191..20883205	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g35790	NA	NA	6	+	20884780..20885037	hypothetical protein
LOC_Os06g35800	Os.38395.3.S1_x_at	11/11	6	+	20889791..20894080	Transposable element protein, putative, MuDR
LOC_Os06g35800	Os.38395.2.S1_x_at	9/11	6	+	20889791..20894080	Transposable element protein, putative, MuDR
LOC_Os06g35800	Os.38395.5.S1_at	3/11	6	+	20889791..20894080	Transposable element protein, putative, MuDR
LOC_Os06g35800	Os.38395.1.S1_at	1/11	6	+	20889791..20894080	Transposable element protein, putative, MuDR
LOC_Os06g35814	Os.2675.1.S1_at	11/11	6	+	20895031..20900671	Ras-related protein RIC2, putative, expressed
LOC_Os06g35814	OsAffx.27955.1.S1_at	8/11	6	+	20895031..20900671	Ras-related protein RIC2, putative, expressed
LOC_Os06g35814	Os.57489.1.S1_x_at	5/11	6	+	20895031..20900671	Ras-related protein RIC2, putative, expressed
LOC_Os06g35830	Os.52241.1.S1_at	11/11	6	+	20905014..20906214	expressed protein
LOC_Os06g35840	NA	NA	6	+	20909428..20913730	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g35850	Os.52163.1.S1_at	11/11	6	+	20914617..20917497	Protein kinase domain containing protein, expressed
LOC_Os06g35860	OsAffx.27956.1.S1_at	11/11	6	+	20923539..20926121	hypothetical protein
LOC_Os06g35860	Os.56283.1.S1_at	1/11	6	+	20923539..20926121	hypothetical protein

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Gene Ontology Classification

GO id	Type	Name
GO:0006886	biological_process	intracellular protein transport
GO:0005802	cellular_component	Golgi trans face
GO:0005525	molecular_function	GTP binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.57489.1.S1_x_at--354--635	3	Chr09:9644635..9644656 (22 bp)	GATGCGGAGGACGACTACGACTACC	LOC_Os09g15790
Os.57489.1.S1_x_at--687--801	1	Chr06:20900523..20900547 (25 bp)	GGAGGACGACTACGACTACCTCTTC	LOC_Os06g35814
Os.57489.1.S1_x_at--174--97	1	Chr06:20900521..20900545 (25 bp)	AGGACGACTACGACTACCTCTTCAA	LOC_Os06g35814
Os.57489.1.S1_x_at--1079--409	2	Chr06:20900517..20900541 (25 bp)	CGACTACGACTACCTCTTCAAGGTG	LOC_Os06g35814
Os.57489.1.S1_x_at--549--961	1	NONE	TCATCGGCGACTCCGGCGATCGGCA	NONE
Os.57489.1.S1_x_at--1018--571	1	NONE	GACTCCGGCGATCGGCAAGTCCAAC	NONE
Os.57489.1.S1_x_at--619--185	1	NONE	ACGAGTTCAGCCCTCGATTCCAAGT	NONE
Os.57489.1.S1_x_at--56--605	1	NONE	GAGTTCAGCCCTCGATTCCAAGTCC	NONE
Os.57489.1.S1_x_at--677--165	1	NONE	AGCCCTCGATTCCAAGTCCACCATC	NONE
Os.57489.1.S1_x_at--422--945	1	NONE	TCGGCGTCGAGTTCGTCACCCGGCT	NONE
Os.57489.1.S1_x_at--785--357	2	Chr01:31730954..31730978 (25 bp)	CGTCAAGGCCCAGATTTGGGACACC	LOC_Os01g54590

Target Sequence

GATGCGGAGGACGACTACGACTACCTCTTCAAGGTGGTCCTCATCGGCGACTCCGGCGATCGGCAAGTCCAACCTNCTCT
ACCGCTTCACCCGCAACGAGTTCAGCCCTCGATTCCAAGTCCACCATCGGCGTCGAGTTCGTCACCCGGCTCCCTGCAGG
TCGACGGCAAGNTCGTCAAGGCCCAGATTTGGGACACC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis