Browse Element(s) Details


Os.2675.1.S1_at

Description gb:D13758.1
DB_XREF= gi:218227
GEN=ss230
TID=Os.2675.1
CNT=86
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.2675 (NCBI UniGene Cluster)
DEF=Oryza sativa ss230 mRNA for ras-related GTP binding protein, complete cds.
PROD=ras-related GTP binding protein
FL= gb:D13758.1 gb:AF327517.1 gb:AK066548.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3581411/11Ras-related protein RIC2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g35780Os.46785.2.S1_x_at2/116+20878191..20883205retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g35790NANA6+20884780..20885037hypothetical protein
LOC_Os06g35800Os.38395.3.S1_x_at11/116+20889791..20894080Transposable element protein, putative, MuDR
LOC_Os06g35800Os.38395.2.S1_x_at9/116+20889791..20894080Transposable element protein, putative, MuDR
LOC_Os06g35800Os.38395.5.S1_at3/116+20889791..20894080Transposable element protein, putative, MuDR
LOC_Os06g35800Os.38395.1.S1_at1/116+20889791..20894080Transposable element protein, putative, MuDR
LOC_Os06g35814Os.2675.1.S1_at11/116+20895031..20900671Ras-related protein RIC2, putative, expressed
LOC_Os06g35814OsAffx.27955.1.S1_at8/116+20895031..20900671Ras-related protein RIC2, putative, expressed
LOC_Os06g35814Os.57489.1.S1_x_at5/116+20895031..20900671Ras-related protein RIC2, putative, expressed
LOC_Os06g35830Os.52241.1.S1_at11/116+20905014..20906214expressed protein
LOC_Os06g35840NANA6+20909428..20913730retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g35850Os.52163.1.S1_at11/116+20914617..20917497Protein kinase domain containing protein, expressed
LOC_Os06g35860OsAffx.27956.1.S1_at11/116+20923539..20926121hypothetical protein
LOC_Os06g35860Os.56283.1.S1_at1/116+20923539..20926121hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006886biological_processintracellular protein transport
GO:0005802cellular_componentGolgi trans face
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2675.1.S1_at--248--8091Chr06:20895691..20895715 (25 bp)
GGACCATACAGACCCAAACATAGTT
LOC_Os06g35814
Os.2675.1.S1_at--1088--4551Chr06:20895637..20895661 (25 bp)
GCGCCATCTTGTAGCGGTTCAAACC
LOC_Os06g35814
Os.2675.1.S1_at--205--3051Chr06:20895584..20895608 (25 bp)
AATCGCTCTATTTCATGGAGACCTC
LOC_Os06g35814
Os.2675.1.S1_at--100--651Chr06:20895533..20895557 (25 bp)
ATGCATTTGCAGAGGTCTTGACCCA
LOC_Os06g35814
Os.2675.1.S1_at--790--3431Chr06:20895510..20895534 (25 bp)
CAGATCTACCGCATCGTGAGCAAGA
LOC_Os06g35814
Os.2675.1.S1_at--649--711Chr06:20895467..20895491 (25 bp)
ATGATGCAGGTTCTGGTCCTGGCAA
LOC_Os06g35814
Os.2675.1.S1_at--84--3991Chr06:20895383..20895407 (25 bp)
CGGGCTAAGCTCTTGCTGTATTTTT
LOC_Os06g35814
Os.2675.1.S1_at--180--8911Chr06:20895346..20895369 (24 bp)
TGAGCTTGTGTTATCGCCGTTCCAA
LOC_Os06g35814
Os.2675.1.S1_at--207--2911Chr06:20895253..20895277 (25 bp)
AAGGTTTGGCCAGATCAGTTTAGAT
LOC_Os06g35814
Os.2675.1.S1_at--658--10231Chr06:20895223..20895247 (25 bp)
TATTGTTGTATGGTCTCCGCGGCAA
LOC_Os06g35814
Os.2675.1.S1_at--10--791Chr06:20895176..20895200 (25 bp)
ATGTGAATCCATTGCAGCCATGCTT
LOC_Os06g35814
Target Sequence 
GGACCATACAGACCCAAACATAGTTGTCATGCTAGTTNGGCAACAAGTCTGATCTNGCGCCATCTTGTAGCGGTTCAAAC
CGATGAAGGGAAGGCATTCGCGGAGAGAGAATCGCTCTATTTCATGGAGACCTCTGCGCTCGAGTCCACCNNNNAACGTT
GAGAATGCATTTGCAGAGGTCTTGACCCAGATCTACCGCATCGTGAGCAAGAGGTCAGTCGAAGCAGGTGATGATGCAGG
TTCTGGTCCTGGCAAGGGTGAGAAGATCAATATAAAGGATGATGTTTCGGCGGTGAAGAAGGGCGGCTGCTGCTCGGGCT
AAGCTCTTGCTGTATTTTTTTTGGGACCTGTGTGAGCTTGTGTTATCGCCGTTCCAAGCGACTGAGAAATTGTTAGTAGT
ATTAGCAACTTCTATGTTACGTAGAGAGTTTATTGCTATAACTGAAAGGTTTGGCCAGATCAGTTTAGATCTTCCTATTG
TTGTATGGTCTCCGCGGCAACTGGGGCATGGTGTTGGTTTTCATGTGAATCCATTGCAGCCATGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2675.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis