Browse Element(s) Details


Os.56283.1.S1_at

Description gb:AK109761.1
DB_XREF= gi:32994970
TID=Os.56283.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56283 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-146-G09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-146-G09, full insert sequence.
FL= gb:AK109761.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3335011/11expressed protein
LOC_Os06g358601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g33320Os.53893.1.S1_at10/116+19400019..19405763extra-large G-protein, putative, expressed
LOC_Os06g33330Os.37531.1.S1_at8/116+19414237..19417330expressed protein
LOC_Os06g33340Os.49603.1.S1_at11/116+19417815..19420857expressed protein
LOC_Os06g33340Os.16076.1.S1_s_at11/116+19417815..19420857expressed protein
LOC_Os06g33350Os.56283.1.S1_at11/116+19426546..19430026expressed protein
LOC_Os06g33360Os.50576.1.S1_at11/116+19433825..19438090NB-ARC domain containing protein, expressed
LOC_Os06g33360Os.50576.1.S2_at11/116+19433825..19438090NB-ARC domain containing protein, expressed
LOC_Os06g33370Os.10278.1.S1_at11/116+19438053..19440383expressed protein
LOC_Os06g33370OsAffx.4987.1.S1_at3/116+19438053..19440383expressed protein
LOC_Os06g33370Os.49603.1.S1_at1/116+19438053..19440383expressed protein
LOC_Os06g33380OsAffx.15711.1.S1_at11/116+19442466..19442869hypothetical protein
LOC_Os06g33390OsAffx.27913.1.S1_at11/116+19444693..19445286expressed protein
LOC_Os06g33400OsAffx.27914.1.S1_at11/116+19447322..19447750hypothetical protein
LOC_Os06g33410OsAffx.27915.1.S1_at8/116+19453210..19454390hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56283.1.S1_at--407--1891Chr06:19427105..19427129 (25 bp)
ACGTTCCGGCCCAGGAAGGATGCGA
LOC_Os06g33350
Os.56283.1.S1_at--530--8751Chr06:19427017..19427041 (25 bp)
TGTACGACTACAGCGAGCCGCTCTT
LOC_Os06g33350
Os.56283.1.S1_at--217--9951Chr06:19426934..19426958 (25 bp)
TACGCCGTCTTCATGGACTGCCTCG
LOC_Os06g33350
Os.56283.1.S1_at--1018--8971Chr06:19426861..19426885 (25 bp)
TGAACCACATGAACCGCGACCGGGA
LOC_Os06g33350
Os.56283.1.S1_at--851--4192Chr06:20925468..20925492 (25 bp)
CCCTGGTGCGCAACTACTTCAGCAA
LOC_Os06g35860
Os.56283.1.S1_at--144--7251Chr06:19426671..19426695 (25 bp)
GTCCCTTGCCGCAGCAGTGATCCTG
LOC_Os06g33350
Os.56283.1.S1_at--961--9091Chr06:19426648..19426672 (25 bp)
TGCTCGCACTCACCATGATGCAGAG
LOC_Os06g33350
Os.56283.1.S1_at--367--711Chr06:19426634..19426658 (25 bp)
ATGATGCAGAGCTTCTTTGCGGCTT
LOC_Os06g33350
Os.56283.1.S1_at--462--4911Chr06:19426624..19426648 (25 bp)
GCTTCTTTGCGGCTTATGCATACTT
LOC_Os06g33350
Os.56283.1.S1_at--578--10131Chr06:19426610..19426634 (25 bp)
TATGCATACTTCAAGCCACCTAAGC
LOC_Os06g33350
Os.56283.1.S1_at--610--3231Chr06:19426599..19426623 (25 bp)
CAAGCCACCTAAGCAGTAATAACTG
LOC_Os06g33350
Target Sequence 
ACGTTCCGGCCCAGGAAGGATGCGACGAGCTTCCTCGACGTCAGGTTCGCCGGCCACGGCGGCGTCCTGGAGATCCCGGA
GCTGCAGCTGTACGACTACAGCGAGCCGCTCTTCCGCAACCTCATCGCCTTCGAGCAGACCTACCCCTACACGCGCGGCC
ACGTCACCGCCTACGCCGTCTTCATGGACTGCCTCGTCACCTCGCCGGAGGACATGAGGCTGCTGCACCTCAGCGGCGTG
CTGGTGAACCACATGAACCGCGACCGGGACCCCACGGGGTTCTTCAGCCGGCTCTGCAGCGAGGCCCACCTGGCTGCCGA
CCGTAACTACCTCGCCGGCGTGATCGGTGAGGTGAATCGGTACCGGCGGTCCAGGTGGCCGCGGTGGCGCGCCGCCCTGG
TGCGCAACTACTTCAGCAACCCATGGGTGGCCACGTCCCTTGCCGCAGCAGTGATCCTGCTCGCACTCACCATGATGCAG
AGCTTCTTTGCGGCTTATGCATACTTCAAGCCACCTAAGCAGTAATAACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56283.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis