Browse Element(s) Details


Os.16076.1.S1_s_at

Description gb:BI801438
DB_XREF= gi:16574142
DB_XREF=H049F03
CLONE=H049F03
TID=Os.16076.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.16076 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_564312.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3334011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g33320Os.53893.1.S1_at10/116+19400019..19405763extra-large G-protein, putative, expressed
LOC_Os06g33330Os.37531.1.S1_at8/116+19414237..19417330expressed protein
LOC_Os06g33340Os.49603.1.S1_at11/116+19417815..19420857expressed protein
LOC_Os06g33340Os.16076.1.S1_s_at11/116+19417815..19420857expressed protein
LOC_Os06g33350Os.56283.1.S1_at11/116+19426546..19430026expressed protein
LOC_Os06g33360Os.50576.1.S1_at11/116+19433825..19438090NB-ARC domain containing protein, expressed
LOC_Os06g33360Os.50576.1.S2_at11/116+19433825..19438090NB-ARC domain containing protein, expressed
LOC_Os06g33370Os.10278.1.S1_at11/116+19438053..19440383expressed protein
LOC_Os06g33370OsAffx.4987.1.S1_at3/116+19438053..19440383expressed protein
LOC_Os06g33370Os.49603.1.S1_at1/116+19438053..19440383expressed protein
LOC_Os06g33380OsAffx.15711.1.S1_at11/116+19442466..19442869hypothetical protein
LOC_Os06g33390OsAffx.27913.1.S1_at11/116+19444693..19445286expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16076.1.S1_s_at--948--2311Chr06:19418083..19418107 (25 bp)
AAAGTCCTTGCTACTCACCGGTGCA
LOC_Os06g33340
Os.16076.1.S1_s_at--733--4831Chr06:19418074..19418098 (25 bp)
GCTACTCACCGGTGCAAATTTAAAA
LOC_Os06g33340
Os.16076.1.S1_s_at--106--5391Chr06:19418009..19418033 (25 bp)
GAAGAATTCTGCATCGTGCTAAATG
LOC_Os06g33340
Os.16076.1.S1_s_at--385--3011Chr06:19417988..19418012 (25 bp)
AATGCACATTGTACACTTTTGACTG
LOC_Os06g33340
Os.16076.1.S1_s_at--649--10231Chr06:19417971..19417995 (25 bp)
TTTGACTGCAAGACACTGCTCACTT
LOC_Os06g33340
Os.16076.1.S1_s_at--1046--2752Chr05:26775050..26775070 (21 bp)
AAGACACTGCTCACTTATCTCATCT
NONE
Os.16076.1.S1_s_at--684--7431Chr06:19417925..19417949 (25 bp)
GTGTATATTTGGTCTAGTATCTGCA
LOC_Os06g33340
Os.16076.1.S1_s_at--393--5211Chr06:19417894..19417918 (25 bp)
GAATACGTGGCCTTACTGTTTAGTG
LOC_Os06g33340
Os.16076.1.S1_s_at--465--8431Chr06:19417886..19417910 (25 bp)
GGCCTTACTGTTTAGTGAAGCCTTT
LOC_Os06g33340
Os.16076.1.S1_s_at--760--7352Chr10:8176360..8176488 (24 bp)
GTGAAGCCTTTGGAGTATCCTGTAA
NONE
Os.16076.1.S1_s_at--1099--3871Chr06:19417853..19417877 (25 bp)
CTGTAAATATGGACGAGATGCTGCT
LOC_Os06g33340
Target Sequence 
AAAGTCCTTGCTACTCACCGGTGCAAATTTAAAATGAGCCGTAATGGGCAAAGCGAAGATAAGGCAAGCAAGAAGAAGAA
TTCTGCATCGTGCTAAATGCACATTGTACACTTTTGACTGCAAGACACTGCTCACTTATCTCATCTTCCTCGCATGTTGT
GTATATTTGGTCTAGTATCTGCAGAATAAGAATACGTGGCCTTACTGTTTAGTGAAGCCTTTGGAGTATCCTGTAAATAT
GGACGAGATGCTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16076.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis