Browse Element(s) Details


Os.50576.1.S2_at

Description gb:AK101846.1
DB_XREF= gi:32987055
TID=Os.50576.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50576 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033069I17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033069I17, full insert sequence.
FL= gb:AK121910.1 gb:AK101846.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3336011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g33330Os.37531.1.S1_at8/116+19414237..19417330expressed protein
LOC_Os06g33340Os.49603.1.S1_at11/116+19417815..19420857expressed protein
LOC_Os06g33340Os.16076.1.S1_s_at11/116+19417815..19420857expressed protein
LOC_Os06g33350Os.56283.1.S1_at11/116+19426546..19430026expressed protein
LOC_Os06g33360Os.50576.1.S1_at11/116+19433825..19438090NB-ARC domain containing protein, expressed
LOC_Os06g33360Os.50576.1.S2_at11/116+19433825..19438090NB-ARC domain containing protein, expressed
LOC_Os06g33370Os.10278.1.S1_at11/116+19438053..19440383expressed protein
LOC_Os06g33370OsAffx.4987.1.S1_at3/116+19438053..19440383expressed protein
LOC_Os06g33370Os.49603.1.S1_at1/116+19438053..19440383expressed protein
LOC_Os06g33380OsAffx.15711.1.S1_at11/116+19442466..19442869hypothetical protein
LOC_Os06g33390OsAffx.27913.1.S1_at11/116+19444693..19445286expressed protein
LOC_Os06g33400OsAffx.27914.1.S1_at11/116+19447322..19447750hypothetical protein
LOC_Os06g33410OsAffx.27915.1.S1_at8/116+19453210..19454390hypothetical protein
LOC_Os06g33420OsAffx.15712.1.S1_at10/116+19456390..19459812transposase, putative

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50576.1.S2_at--1094--3351Chr06:19437569..19437593 (25 bp)
CACCCTGTTGTTCCGCAAGTTGAGA
LOC_Os06g33360
Os.50576.1.S2_at--624--10771Chr06:19437588..19437612 (25 bp)
TTGAGATTCTGCACGATGGCCACGA
LOC_Os06g33360
Os.50576.1.S2_at--451--8731Chr06:19437665..19437689 (25 bp)
TGTCTCAGTCATGCCATACCTGGAA
LOC_Os06g33360
Os.50576.1.S2_at--892--3131Chr06:19437688..19437712 (25 bp)
AATTACTTCACTTCAGCTTGGACGT
LOC_Os06g33360
Os.50576.1.S2_at--18--6051Chr06:19437767..19437791 (25 bp)
GAGTTCTCTTCGCACAGTAAAGGTT
LOC_Os06g33360
Os.50576.1.S2_at--645--1171Chr06:19437782..19437806 (25 bp)
AGTAAAGGTTTTTGTGCTCTGCCAC
LOC_Os06g33360
Os.50576.1.S2_at--926--7311Chr06:19437795..19437819 (25 bp)
GTGCTCTGCCACTTAGCCAAAGAAG
LOC_Os06g33360
Os.50576.1.S2_at--578--2812Chr08:5831084..5831103 (20 bp)
AAGATAAAATGCTCCCTTCTCACCT
NONE
Os.50576.1.S2_at--357--5491Chr06:19437946..19437970 (25 bp)
GAACATCGTAGCCATCACATATCTC
LOC_Os06g33360
Os.50576.1.S2_at--341--4211Chr06:19437970..19437994 (25 bp)
CCCCAGTCACTCTATCTGTTGGAAA
LOC_Os06g33360
Os.50576.1.S2_at--472--751Chr06:19438019..19438043 (25 bp)
ATGTACCCTGTATTGCATGCATAGT
LOC_Os06g33360
Target Sequence 
CACCCTGTTGTTCCGCAAGTTGAGATTCTGCACGATGGCCACGACCTCCATCCGGTTTGTACCACCTCCTGCTGCTAGTG
CTGCCGTCACAACACCTGTCTCAGTCATGCCATACCTGGAATTACTTCACTTCAGCTTGGACGTGCACTTCTTCAAGGAC
AGGAAAATTGCTTTTGACATTGGCTTGGAGCACCTCCCGAGTTCTCTTCGCACAGTAAAGGTTTTTGTGCTCTGCCACTT
AGCCAAAGAAGAAGACGTCAAGGAGGCGGAGGCGGCATTGTTGCACTCCGTCAGCATCCATCCCAGCCGTCCCGCCCTTC
AACTCGAAAGATTGGCCGAAGATAAAATGCTCCCTTCTCACCTCAAAGATGATCAGTGAACATCGTAGCCATCACATATC
TCCCCAGTCACTCTATCTGTTGGAAATCATTCATGTGATGTACTAAGATAATGTACCCTGTATTGCATGCATAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50576.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis