Browse Element(s) Details


OsAffx.27915.1.S1_at

Description tigr:9634.m03132
TID=OsAffx.27915.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g334108/11hypothetical protein
LOC_Os11g479904/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g33350Os.56283.1.S1_at11/116+19426546..19430026expressed protein
LOC_Os06g33360Os.50576.1.S1_at11/116+19433825..19438090NB-ARC domain containing protein, expressed
LOC_Os06g33360Os.50576.1.S2_at11/116+19433825..19438090NB-ARC domain containing protein, expressed
LOC_Os06g33370Os.10278.1.S1_at11/116+19438053..19440383expressed protein
LOC_Os06g33370OsAffx.4987.1.S1_at3/116+19438053..19440383expressed protein
LOC_Os06g33370Os.49603.1.S1_at1/116+19438053..19440383expressed protein
LOC_Os06g33380OsAffx.15711.1.S1_at11/116+19442466..19442869hypothetical protein
LOC_Os06g33390OsAffx.27913.1.S1_at11/116+19444693..19445286expressed protein
LOC_Os06g33400OsAffx.27914.1.S1_at11/116+19447322..19447750hypothetical protein
LOC_Os06g33410OsAffx.27915.1.S1_at8/116+19453210..19454390hypothetical protein
LOC_Os06g33420OsAffx.15712.1.S1_at10/116+19456390..19459812transposase, putative
LOC_Os06g33430NANA6+19466522..19472679retrotransposon protein, putative, unclassified
LOC_Os06g33440OsAffx.19542.3.S1_x_at7/116+19479341..19480863retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27915.1.S1_at--152--8351Chr11:28382890..28382914 (25 bp)
GGCTGGATCCGTGACCATTGAGAAT
LOC_Os11g47990
OsAffx.27915.1.S1_at--834--3852Chr11:28382843..28382867 (25 bp)
CTGAACTTGGGTTGGCTGGCACCGC
LOC_Os11g47990
OsAffx.27915.1.S1_at--667--1312Chr11:28382810..28382834 (25 bp)
AGATGGCTCATCGATGGCACAAGGC
LOC_Os11g47990
OsAffx.27915.1.S1_at--117--8372Chr11:28382782..28382806 (25 bp)
GGCGTGGTCTCCATTCGTCAAAGCA
LOC_Os11g47990
OsAffx.27915.1.S1_at--1098--371Chr06:19454081..19454105 (25 bp)
ATCACAGCCCACAGGATAGCTCTAA
LOC_Os06g33410
OsAffx.27915.1.S1_at--122--6931Chr06:19454050..19454074 (25 bp)
GTAGTGGTAGTCGTAGTCCTGAATA
LOC_Os06g33410
OsAffx.27915.1.S1_at--1073--5051Chr06:19454008..19454032 (25 bp)
GCAGCTCTGCTAGTGAGAACATCTC
LOC_Os06g33410
OsAffx.27915.1.S1_at--909--7531Chr06:19453964..19453988 (25 bp)
GTGGCTGCCAAGAATAGAACCTCTA
LOC_Os06g33410
OsAffx.27915.1.S1_at--576--1431Chr06:19453949..19453973 (25 bp)
AGAACCTCTAACAATGCCCAAGCAA
LOC_Os06g33410
OsAffx.27915.1.S1_at--674--2331Chr06:19453856..19453950 (25 bp)
AAAGAACTCCAAAGCGGTCCATCCT
LOC_Os06g33410
OsAffx.27915.1.S1_at--249--571Chr06:19453836..19453860 (25 bp)
ATCCTGCTCCGCGTTCAAATAGGAG
LOC_Os06g33410
Target Sequence 
GGCTGGATCCGTGACCATTGAGAATGGGGCATATGGATCTGAAGACCCTGAACTTGGGTTGGCTGGCACCGCCGGGGAAG
AGATGGCTCATCGATGGCACAAGGCGGCGGCGTGGTCTCCATTCGTCAAAGCACCGGCGCNGGNGCTGGATCTACTCGCG
AGTGGCGATGGGGACTGCAGAAGGAGGAGAGGGGTGGCGGCGGNGGCTNGAGGGATTGGGACGNGAGGGATGAAAAACTA
GAAAATATCACAGCCCACAGGATAGCTCTAAAGTCTGGTAGTGGTAGTCGTAGTCCTGAATATGTAGAGTCAGGGGATAG
CAGCTCTGCTAGTGAGAACATCTCTGATGATGAAGATGATAATGTGGCTGCCAAGAATAGAACCTCTAACAATGCCCAAG
CAAAGAACTCCAAAGCGGTCCATCCTGCTCCGCGTTCAAATAGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27915.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis