Browse Element(s) Details

Os.52163.1.S1_at

Description

gb:AK065388.1
DB_XREF= gi:32975406
TID=Os.52163.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52163 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013022I17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013022I17, full insert sequence.
FL= gb:AK065388.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g35850	11/11	Protein kinase domain containing protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g35800	Os.38395.3.S1_x_at	11/11	6	+	20889791..20894080	Transposable element protein, putative, MuDR
LOC_Os06g35800	Os.38395.2.S1_x_at	9/11	6	+	20889791..20894080	Transposable element protein, putative, MuDR
LOC_Os06g35800	Os.38395.5.S1_at	3/11	6	+	20889791..20894080	Transposable element protein, putative, MuDR
LOC_Os06g35800	Os.38395.1.S1_at	1/11	6	+	20889791..20894080	Transposable element protein, putative, MuDR
LOC_Os06g35814	Os.2675.1.S1_at	11/11	6	+	20895031..20900671	Ras-related protein RIC2, putative, expressed
LOC_Os06g35814	OsAffx.27955.1.S1_at	8/11	6	+	20895031..20900671	Ras-related protein RIC2, putative, expressed
LOC_Os06g35814	Os.57489.1.S1_x_at	5/11	6	+	20895031..20900671	Ras-related protein RIC2, putative, expressed
LOC_Os06g35830	Os.52241.1.S1_at	11/11	6	+	20905014..20906214	expressed protein
LOC_Os06g35840	NA	NA	6	+	20909428..20913730	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g35850	Os.52163.1.S1_at	11/11	6	+	20914617..20917497	Protein kinase domain containing protein, expressed
LOC_Os06g35860	OsAffx.27956.1.S1_at	11/11	6	+	20923539..20926121	hypothetical protein
LOC_Os06g35860	Os.56283.1.S1_at	1/11	6	+	20923539..20926121	hypothetical protein
LOC_Os06g35870	OsAffx.15760.1.S1_at	11/11	6	+	20928243..20930165	D-mannose binding lectin family protein
LOC_Os06g35880	OsAffx.15761.1.S1_at	10/11	6	+	20930635..20933472	hypothetical protein
LOC_Os06g35890	NA	NA	6	+	20938338..20938692	hypothetical protein
LOC_Os06g35900	Os.54005.1.S1_at	11/11	6	+	20940123..20943080	BES1/BZR1 homolog protein 4, putative, expressed
LOC_Os06g35900	OsAffx.24237.1.S1_x_at	11/11	6	+	20940123..20943080	BES1/BZR1 homolog protein 4, putative, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0004672	molecular_function	protein kinase activity
GO:0005515	molecular_function	protein binding
GO:0016301	molecular_function	kinase activity
GO:0030246	molecular_function	carbohydrate binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.52163.1.S1_at--1042--1047	1	Chr06:20916902..20916926 (25 bp)	TTACTTAGCCCCTGAGTGGTTGACA	LOC_Os06g35850
Os.52163.1.S1_at--292--751	1	Chr06:20916917..20916941 (25 bp)	GTGGTTGACATCTGTGATCACTGAA	LOC_Os06g35850
Os.52163.1.S1_at--956--521	1	Chr06:20916998..20917022 (25 bp)	GAATTTGGACTACTCGCAGCCTGAA	LOC_Os06g35850
Os.52163.1.S1_at--224--167	1	Chr06:20917015..20917039 (25 bp)	AGCCTGAAGAAAGCTGCCATCTCAT	LOC_Os06g35850
Os.52163.1.S1_at--840--443	1	Chr06:20917030..20917054 (25 bp)	GCCATCTCATCAGCATGTTGCAGGA	LOC_Os06g35850
Os.52163.1.S1_at--138--585	1	Chr06:20917080..20917104 (25 bp)	GACCTTATCGATCCATGTTTCTTTG	LOC_Os06g35850
Os.52163.1.S1_at--882--749	1	Chr06:20917154..20917178 (25 bp)	GTGGTGCTTGCAAGTCGATAACAAT	LOC_Os06g35850
Os.52163.1.S1_at--890--197	1	Chr06:20917236..20917260 (25 bp)	ACTGAACTTGATTTTGACCTGGTAA	LOC_Os06g35850
Os.52163.1.S1_at--971--989	1	Chr06:20917310..20917334 (25 bp)	TACTTTGCAGGTAGACTCTGTCCTT	LOC_Os06g35850
Os.52163.1.S1_at--1091--197	1	Chr06:20917324..20917348 (25 bp)	ACTCTGTCCTTTCAGGGCCAAGATG	LOC_Os06g35850
Os.52163.1.S1_at--1013--699	1	Chr06:20917406..20917430 (25 bp)	GTACTCCTGTTTTCCTATACTATGG	LOC_Os06g35850

Target Sequence

TTACTTAGCCCCTGAGTGGTTGACATCTGTGATCACTGAAAAGGTTGATGTGTATAGCTTTGGCGTTGTGATAATGGAAA
TTTTATGCAGCAGAAGGAATTTGGACTACTCGCAGCCTGAAGAAAGCTGCCATCTCATCAGCATGTTGCAGGAGAAGGCC
AAAAATAACCAGTTGATGGACCTTATCGATCCATGTTTCTTTGATATGGAATTACATATGGATGATGTTTTATGAATGAT
GAATTTAGCAATGTGGTGCTTGCAAGTCGATAACAATAGAAGGCCTTCCATGTCCATGGTGGTCAAAATCCTGGAAGGTA
CCATGGATGTTGAAACTGAACTTGATTTTGACCTGGTAAACATAGACCCGATGGTAGTAGCACATCGAGCAGCTCAAAGG
AACAGTATTACTTTGCAGGTAGACTCTGTCCTTTCAGGGCCAAGATGAAATACAAGGAGCTCAAATATATTCTTCAAAGA
TATCAAGCTCAAGATTGAAAACACGTACTCCTGTTTTCCTATACTATGG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis