Browse Element(s) Details


Os.38395.2.S1_x_at

Description gb:NM_193316.1
DB_XREF= gi:34913715
GEN=OSJNBa0065J17.12
TID=Os.38395.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.38395 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) Putative mutator-like transposase (OSJNBa0065J17.12), mRNA.
PROD=Putative mutator-like transposase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3625011/11transposon protein, putative, Mutator sub-class
LOC_Os06g358009/11Transposable element protein, putative, MuDR
LOC_Os01g198949/11transposon protein, putative, Mutator sub-class
LOC_Os07g226109/11transposon protein, putative, Mutator sub-class
LOC_Os04g554509/11transposon protein, putative, Mutator sub-class
LOC_Os04g418409/11transposon protein, putative, Mutator sub-class
LOC_Os05g169109/11transposon protein, putative, Mutator sub-class
LOC_Os03g451409/11transposon protein, putative, Mutator sub-class
LOC_Os02g439909/11hypothetical protein
LOC_Os11g254109/11Transposable element protein, putative, MuDR
LOC_Os03g057909/11transposon protein, putative, Mutator sub-class
LOC_Os04g530909/11SWIM zinc finger family protein
LOC_Os07g202409/11transposon protein, putative, Mutator sub-class, expressed
LOC_Os04g247308/11transposon protein, putative, Mutator sub-class
LOC_Os04g024208/11transposon protein, putative, Mutator sub-class
LOC_Os01g239308/11transposon protein, putative, Mutator sub-class
LOC_Os05g397808/11transposon protein, putative, Mutator sub-class
LOC_Os01g631708/11transposon protein, putative, Mutator sub-class
LOC_Os11g136408/11transposon protein, putative, Mutator sub-class
LOC_Os01g416207/11transposon protein, putative, Mutator sub-class
LOC_Os09g172007/11transposon protein, putative, Mutator sub-class
LOC_Os08g139707/11retrotransposon protein, putative, unclassified
LOC_Os01g362606/11Transposable element protein, putative, MuDR
LOC_Os06g191606/11retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os11g151706/11transposon protein, putative, Mutator sub-class
LOC_Os03g021306/11hypothetical protein
LOC_Os07g395805/11hypothetical protein
LOC_Os03g030505/11expressed protein
LOC_Os02g306802/11transposon protein, putative, Mutator sub-class
LOC_Os07g449802/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g36240Os.32292.1.S1_at11/111+20388808..20393302Peroxidase 72 precursor, putative, expressed
LOC_Os01g36250Os.38395.2.S1_x_at11/111+20397015..20403075transposon protein, putative, Mutator sub-class
LOC_Os01g36250Os.38395.4.S1_x_at9/111+20397015..20403075transposon protein, putative, Mutator sub-class
LOC_Os01g36250Os.38395.3.S1_x_at9/111+20397015..20403075transposon protein, putative, Mutator sub-class
LOC_Os01g36250Os.38395.1.S1_at1/111+20397015..20403075transposon protein, putative, Mutator sub-class
LOC_Os01g36260Os.38395.3.S1_x_at8/111+20420864..20426977Transposable element protein, putative, MuDR
LOC_Os01g36260Os.38395.4.S1_x_at8/111+20420864..20426977Transposable element protein, putative, MuDR
LOC_Os01g36260Os.38395.2.S1_x_at6/111+20420864..20426977Transposable element protein, putative, MuDR
LOC_Os01g36260Os.38395.1.S1_at1/111+20420864..20426977Transposable element protein, putative, MuDR
LOC_Os01g36270OsAffx.23361.1.S1_s_at11/111+20427488..20429131hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38395.2.S1_x_at--1072--106725Chr11:13989461..13989485 (25 bp)
TTCCAGCGTGGATCGGAGTGGTCCA
LOC_Os11g25410
Os.38395.2.S1_x_at--99--79726Chr11:13989470..13989494 (25 bp)
GGATCGGAGTGGTCCATCCTCTTCA
LOC_Os11g25410
Os.38395.2.S1_x_at--707--5526Chr11:13989485..13989509 (25 bp)
ATCCTCTTCACGTCGCGGGTACGAA
LOC_Os11g25410
Os.38395.2.S1_x_at--857--17126Chr11:13989614..13989674 (25 bp)
ACCACGTCCGCAGGGAGCATCTGGG
LOC_Os11g25410
Os.38395.2.S1_x_at--901--9291Chr01:20397523..20397545 (23 bp)
TCCGCAGGGAGCATCTGGGTCGACA
LOC_Os01g36250
Os.38395.2.S1_x_at--874--8591Chr01:20397508..20397532 (25 bp)
TGGGTCGACACACTTCCCTTACATG
LOC_Os01g36250
Os.38395.2.S1_x_at--337--25724Chr11:13989708..13989732 (25 bp)
AACGTGTTGAACACACCAGCATGGG
LOC_Os11g25410
Os.38395.2.S1_x_at--321--76330Chr11:13989731..13989755 (25 bp)
GGGACTTCATATCACTCCGCGTGCG
LOC_Os11g25410
Os.38395.2.S1_x_at--949--72930Chr11:13989751..13989775 (25 bp)
GTGCGCCAGAGCAGGGCCACACACA
LOC_Os11g25410
Os.38395.2.S1_x_at--970--59326Chr11:13989759..13989783 (25 bp)
GAGCAGGGCCACACACAGCACACAT
LOC_Os11g25410
Os.38395.2.S1_x_at--255--34122Chr11:13989774..13989895 (25 bp)
CAGCACACATACGATGAGTACGGTT
LOC_Os11g25410
Target Sequence 
TTCCAGCGTGGATCGGAGTGGTCCATCCTCTTCACGTCGCGGGTACGAAGCGGCCCACACATCTCACGGTCGTCCTTCCT
TTCAGCACACCCCAGCACCGGAGTACACCAGGGGGTCAACCGGATCAGGGGTACCCACGTCGAGCACGGCACCACCACGT
CCGCAGGGAGCATCTGGGTCGACACACTTCCCTTACATGCCAACGGGGGACAACGTGTTGAACACACCAGCATGGGGACT
TCATATCACTCCGCGTGCGCCAGAGCAGGGCCACACACAGCACACATACGATGAGTACGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38395.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis