Browse Element(s) Details


OsAffx.27955.1.S1_at

Description tigr:9634.m03391
TID=OsAffx.27955.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to 123852 rab11
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g358148/11Ras-related protein RIC2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g35780Os.46785.2.S1_x_at2/116+20878191..20883205retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g35790NANA6+20884780..20885037hypothetical protein
LOC_Os06g35800Os.38395.3.S1_x_at11/116+20889791..20894080Transposable element protein, putative, MuDR
LOC_Os06g35800Os.38395.2.S1_x_at9/116+20889791..20894080Transposable element protein, putative, MuDR
LOC_Os06g35800Os.38395.5.S1_at3/116+20889791..20894080Transposable element protein, putative, MuDR
LOC_Os06g35800Os.38395.1.S1_at1/116+20889791..20894080Transposable element protein, putative, MuDR
LOC_Os06g35814Os.2675.1.S1_at11/116+20895031..20900671Ras-related protein RIC2, putative, expressed
LOC_Os06g35814OsAffx.27955.1.S1_at8/116+20895031..20900671Ras-related protein RIC2, putative, expressed
LOC_Os06g35814Os.57489.1.S1_x_at5/116+20895031..20900671Ras-related protein RIC2, putative, expressed
LOC_Os06g35830Os.52241.1.S1_at11/116+20905014..20906214expressed protein
LOC_Os06g35840NANA6+20909428..20913730retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g35850Os.52163.1.S1_at11/116+20914617..20917497Protein kinase domain containing protein, expressed
LOC_Os06g35860OsAffx.27956.1.S1_at11/116+20923539..20926121hypothetical protein
LOC_Os06g35860Os.56283.1.S1_at1/116+20923539..20926121hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006886biological_processintracellular protein transport
GO:0005802cellular_componentGolgi trans face
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27955.1.S1_at--170--4271NONE
CCGGCCAGGAGCGAATTGCATTTTT
NONE
OsAffx.27955.1.S1_at--809--4411NONE
GCCAGGAGCGAATTGCATTTTTTGC
NONE
OsAffx.27955.1.S1_at--415--971NONE
AGGAGCGAATTGCATTTTTTGCTGT
NONE
OsAffx.27955.1.S1_at--187--3591Chr06:20897815..20897839 (25 bp)
CATTTTTTGCTGTCCACTACCACAA
LOC_Os06g35814
OsAffx.27955.1.S1_at--789--171Chr06:20897814..20897838 (25 bp)
ATTTTTTGCTGTCCACTACCACAAC
LOC_Os06g35814
OsAffx.27955.1.S1_at--1078--10271Chr06:20897810..20897834 (25 bp)
TTTGCTGTCCACTACCACAACCTGT
LOC_Os06g35814
OsAffx.27955.1.S1_at--802--9971Chr06:20897798..20897822 (25 bp)
TACCACAACCTGTTTATATCAAATA
LOC_Os06g35814
OsAffx.27955.1.S1_at--289--2631Chr06:20897792..20897816 (25 bp)
AACCTGTTTATATCAAATAAGGCAC
LOC_Os06g35814
OsAffx.27955.1.S1_at--1149--2251Chr06:20897778..20897802 (25 bp)
AAATAAGGCACTTGAACCACAGAAG
LOC_Os06g35814
OsAffx.27955.1.S1_at--132--8251Chr06:20897772..20897796 (25 bp)
GGCACTTGAACCACAGAAGTTGACT
LOC_Os06g35814
OsAffx.27955.1.S1_at--879--8971Chr06:20897766..20897790 (25 bp)
TGAACCACAGAAGTTGACTAAGTCA
LOC_Os06g35814
Target Sequence 
CCGGCCAGGAGCGAATTGCATTTTTTGCTGTCCACTACCACAACCTGTTTATATCAAATAAGGCACTTGAACCACAGAAG
TTGACTAAGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27955.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis