Browse Element(s) Details


OsAffx.27956.1.S1_at

Description tigr:9634.m03395
TID=OsAffx.27956.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3586011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g35814Os.2675.1.S1_at11/116+20895031..20900671Ras-related protein RIC2, putative, expressed
LOC_Os06g35814OsAffx.27955.1.S1_at8/116+20895031..20900671Ras-related protein RIC2, putative, expressed
LOC_Os06g35814Os.57489.1.S1_x_at5/116+20895031..20900671Ras-related protein RIC2, putative, expressed
LOC_Os06g35830Os.52241.1.S1_at11/116+20905014..20906214expressed protein
LOC_Os06g35840NANA6+20909428..20913730retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g35850Os.52163.1.S1_at11/116+20914617..20917497Protein kinase domain containing protein, expressed
LOC_Os06g35860OsAffx.27956.1.S1_at11/116+20923539..20926121hypothetical protein
LOC_Os06g35860Os.56283.1.S1_at1/116+20923539..20926121hypothetical protein
LOC_Os06g35870OsAffx.15760.1.S1_at11/116+20928243..20930165D-mannose binding lectin family protein
LOC_Os06g35880OsAffx.15761.1.S1_at10/116+20930635..20933472hypothetical protein
LOC_Os06g35890NANA6+20938338..20938692hypothetical protein
LOC_Os06g35900Os.54005.1.S1_at11/116+20940123..20943080BES1/BZR1 homolog protein 4, putative, expressed
LOC_Os06g35900OsAffx.24237.1.S1_x_at11/116+20940123..20943080BES1/BZR1 homolog protein 4, putative, expressed
LOC_Os06g35910Os.18861.1.S1_a_at11/116+20945147..20951719zinc finger family protein, putative, expressed
LOC_Os06g35910OsAffx.27957.1.S1_at11/116+20945147..20951719zinc finger family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27956.1.S1_at--427--7131Chr06:20925413..20925566 (25 bp)
GTCATCCACGAGAGCTTCTTTGCAG
LOC_Os06g35860
OsAffx.27956.1.S1_at--481--4912Chr06:20925555..20925579 (25 bp)
GCTTCTTTGCAGCTTAAAACATCAG
LOC_Os06g35860
OsAffx.27956.1.S1_at--311--2511Chr06:20925572..20925596 (25 bp)
AACATCAGCAATGGATGCCCCTGGG
LOC_Os06g35860
OsAffx.27956.1.S1_at--343--3431Chr06:20925647..20925671 (25 bp)
CAGAGAGCCGCGACCCCTGTGCAAG
LOC_Os06g35860
OsAffx.27956.1.S1_at--157--4272Chr07:564530..564550 (21 bp)
CCTGTGCAAGGGACGCGGCTCTACG
NONE
OsAffx.27956.1.S1_at--374--971Chr06:20925742..20925766 (25 bp)
AGGAGCCTGTGGACACGGCTCTCTC
LOC_Os06g35860
OsAffx.27956.1.S1_at--535--1351Chr06:20925843..20925867 (25 bp)
AGAGAGTACCGCCTCCGGCCAGTGA
LOC_Os06g35860
OsAffx.27956.1.S1_at--770--6751Chr06:20925994..20926018 (25 bp)
GTTCACCGCTCGATGACGCGACGGC
LOC_Os06g35860
OsAffx.27956.1.S1_at--461--5731Chr06:20926013..20926037 (25 bp)
GACGGCGACGAACAAATCCGCTGAC
LOC_Os06g35860
OsAffx.27956.1.S1_at--970--5491Chr06:20926022..20926046 (25 bp)
GAACAAATCCGCTGACAAAGCTCCG
LOC_Os06g35860
OsAffx.27956.1.S1_at--997--5071Chr06:20926056..20926080 (25 bp)
GCAGCCCTTCTCATTGTCTTCACAG
LOC_Os06g35860
Target Sequence 
GTCATCCACGAGAGCTTCTTTGCAGCTTAAAACATCAGCAATGGATGCCCCTGGGGCGTATCCCTACTCACGGCGTCCAC
TTTTCCGGCCGGAGCCGTCTCCTAGCAGAGAGCCGCGACCCCTGTGCAAGGGACGCGGCTCTACGAGCTCCTCTACTGGG
GACCGGGCGAGGAGCCGCACTGGGTTGGCTGTGGCTAGGGAGGAGCCTGTGGACACGGCTCTCTCCCCCCGTTTTTCCCC
TTCTACCCTCGCCGGCTGCCGGAAGGAGAGAGAGGCAGCGACGAGAGAGAGAGAGAGAGAGAGAGAGTACCGCCTCCGGC
CAGTGACGGTGCGAGGCGGAGGAGGTCGCGACGGCGACGACACGATGTGGGGAGATCGGCGATGGCGTGAGGCGGGGAGG
ACGGCAACGGCGCAGCGAGCGGCACCGACGACGGATCCGTGCATCGCTCGCCGTTCACCGCTCGATGACGCGACGGCGAC
GAACAAATCCGCTGACAAAGCTCCGGCGGTGGCGGCAGCCCTTCTCATTGTCTTCACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27956.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis