Browse Element(s) Details


OsAffx.27957.1.S1_at

Description tigr:9634.m03400
TID=OsAffx.27957.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3591011/11zinc finger family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g35860OsAffx.27956.1.S1_at11/116+20923539..20926121hypothetical protein
LOC_Os06g35860Os.56283.1.S1_at1/116+20923539..20926121hypothetical protein
LOC_Os06g35870OsAffx.15760.1.S1_at11/116+20928243..20930165D-mannose binding lectin family protein
LOC_Os06g35880OsAffx.15761.1.S1_at10/116+20930635..20933472hypothetical protein
LOC_Os06g35890NANA6+20938338..20938692hypothetical protein
LOC_Os06g35900Os.54005.1.S1_at11/116+20940123..20943080BES1/BZR1 homolog protein 4, putative, expressed
LOC_Os06g35900OsAffx.24237.1.S1_x_at11/116+20940123..20943080BES1/BZR1 homolog protein 4, putative, expressed
LOC_Os06g35910Os.18861.1.S1_a_at11/116+20945147..20951719zinc finger family protein, putative, expressed
LOC_Os06g35910OsAffx.27957.1.S1_at11/116+20945147..20951719zinc finger family protein, putative, expressed
LOC_Os06g35920OsAffx.15763.1.S1_at10/116+20952443..20953274hypothetical protein
LOC_Os06g35930OsAffx.15764.1.S1_at9/116+20959709..20960822MIP family channel proteins containing protein
LOC_Os06g35940OsAffx.15765.1.S1_at10/116+20970972..20973161FLOWERING LOCUS T protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27957.1.S1_at--176--5091Chr06:20946536..20946560 (25 bp)
GCACCAGCGGCAATGGAGTTTCTGT
LOC_Os06g35910
OsAffx.27957.1.S1_at--919--6073Chr06:16577442..16577466 (25 bp)
GAGTTTCTGTCCTTGCATGGTGTAC
NONE
OsAffx.27957.1.S1_at--857--8073Chr06:16577485..16577515 (25 bp)
GGAGCATCACCGATCCATGCAAACC
NONE
OsAffx.27957.1.S1_at--100--6371Chr06:20946467..20946491 (25 bp)
GATCCATGCAAACCGTCCATAGTGA
LOC_Os06g35910
OsAffx.27957.1.S1_at--138--231Chr06:20946449..20946473 (25 bp)
ATAGTGAAACCGTTCCACCGTCAAG
LOC_Os06g35910
OsAffx.27957.1.S1_at--593--7071Chr06:20946430..20946454 (25 bp)
GTCAAGCGTGCATCACCGACGGAGA
LOC_Os06g35910
OsAffx.27957.1.S1_at--234--10631Chr06:20946386..20946410 (25 bp)
TTCGTCATCTTGCTGTTCGATCAAT
LOC_Os06g35910
OsAffx.27957.1.S1_at--789--6451Chr06:20946368..20946392 (25 bp)
GATCAATCAATCAACTCCAGCGGTA
LOC_Os06g35910
OsAffx.27957.1.S1_at--277--2552Chr06:16577613..16577637 (25 bp)
AACTCCAGCGGTATGCGATTGCACA
NONE
OsAffx.27957.1.S1_at--362--6592Chr06:16577629..16577653 (25 bp)
GATTGCACAGCAAAACGCATCGAAA
NONE
OsAffx.27957.1.S1_at--469--2291Chr06:20946280..20946304 (25 bp)
AAATGACGCGATCATCACTGGCGGC
LOC_Os06g35910
Target Sequence 
GCACCAGCGGCAATGGAGTTTCTGTCCTTGCATGGTGTACCGGCGGCGGCGGCCGCCCGGAGCATCACCGATCCATGCAA
ACCGTCCATAGTGAAACCGTTCCACCGTCAAGCGTGCATCACCGACGGAGACAAGCTGCTCGCGGCGCGCTTCGTCATCT
TGCTGTTCGATCAATCAATCAACTCCAGCGGTATGCGATTGCACAGCAAAACGCATCGAAAATTAAATGGGAGCATGCAA
TTTCGATCGATCAATTAAATGACGCGATCATCACTGGCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27957.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis