Browse Element(s) Details


OsAffx.15764.1.S1_at

Description tigr:9634.m03403
TID=OsAffx.15764.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AL161549 major intrinsic protein (MIP)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g359309/11MIP family channel proteins containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g35890NANA6+20938338..20938692hypothetical protein
LOC_Os06g35900Os.54005.1.S1_at11/116+20940123..20943080BES1/BZR1 homolog protein 4, putative, expressed
LOC_Os06g35900OsAffx.24237.1.S1_x_at11/116+20940123..20943080BES1/BZR1 homolog protein 4, putative, expressed
LOC_Os06g35910Os.18861.1.S1_a_at11/116+20945147..20951719zinc finger family protein, putative, expressed
LOC_Os06g35910OsAffx.27957.1.S1_at11/116+20945147..20951719zinc finger family protein, putative, expressed
LOC_Os06g35920OsAffx.15763.1.S1_at10/116+20952443..20953274hypothetical protein
LOC_Os06g35930OsAffx.15764.1.S1_at9/116+20959709..20960822MIP family channel proteins containing protein
LOC_Os06g35940OsAffx.15765.1.S1_at10/116+20970972..20973161FLOWERING LOCUS T protein, putative
LOC_Os06g35950OsAffx.31661.2.S1_at8/116+20981677..20982251hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0016020cellular_componentmembrane
GO:0015250molecular_functionwater channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15764.1.S1_at--37--7131Chr06:20960113..20960137 (25 bp)
GTCATGGCGATGGTGTACGCCGTCG
LOC_Os06g35930
OsAffx.15764.1.S1_at--629--9951NONE
TACGCTCTGGCGCAGCAAGTTCGTT
NONE
OsAffx.15764.1.S1_at--325--5051NONE
GCAGCAAGTTCGTTTCGCCCGTCTC
NONE
OsAffx.15764.1.S1_at--794--3351Chr06:20960329..20960353 (25 bp)
CACGCGCAGTCGCTCGTCATCGAGT
LOC_Os06g35930
OsAffx.15764.1.S1_at--119--3371Chr06:20960397..20960494 (25 bp)
CACCGATGACCAAGCGGTGGGTCAT
LOC_Os06g35930
OsAffx.15764.1.S1_at--1047--8911Chr06:20960403..20960500 (25 bp)
TGACCAAGCGGTGGGTCATATGGCT
LOC_Os06g35930
OsAffx.15764.1.S1_at--1000--8331Chr06:20960506..20960530 (25 bp)
GGCTGTGGGTGGAACCATCATGCTC
LOC_Os06g35930
OsAffx.15764.1.S1_at--529--5432Chr06:20960517..20960541 (25 bp)
GAACCATCATGCTCAATGTGCTGTT
LOC_Os06g35930
OsAffx.15764.1.S1_at--341--9851Chr06:20960721..20960745 (25 bp)
TACACGGCGCTGTGGGTGTACATCT
LOC_Os06g35930
OsAffx.15764.1.S1_at--495--8631Chr06:20960731..20960755 (25 bp)
TGTGGGTGTACATCTTGGGACCGTT
LOC_Os06g35930
OsAffx.15764.1.S1_at--906--6951Chr06:20960738..20960762 (25 bp)
GTACATCTTGGGACCGTTCGCCGGT
LOC_Os06g35930
Target Sequence 
GTCATGGCGATGGTGTACGCCGTCGGCCACGTCTCCGGCGCGCACCTCAACCCGGCCGTCACCCTCGGCTTCACCGTCGC
CGGCCGCTTCCCGTGGAGGCGCGCGCCCGCGTACGCTCTGGCGCAGCAAGTTCGTTTCGCCCGTCTCCCGCCCGCTTCTC
CGTGGAGGCGCGCGCCCGCGTACGCGCTGGCGCAGAAGGCCGCCGCCACGGCGGCGAGCGTGGTGCTGCGGCTCATGTTC
GGCGGCCGGCACGCGCCCGTGCCGGCCACGCTGCCGGGCGGCGCCCACGCGCAGTCGCTCGTCATCGAGTTCGTCATCAC
CTTCTACCTCATGTTCGTCATCATGGCTGTCGCCACCGATGACCAAGCGGTGGGTCATATGGCTGGAGTGGCTGTGGGTG
GAACCATCATGCTCAATGTGCTGTTTGCTGGGCCGGTGTCGGGGGCGTCGATGAACCCGGCGAGGAGCATTGGGCCGGCG
TTGGTGGGGAGCAAGTACACGGCGCTGTGGGTGTACATCTTGGGACCGTTCGCCGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15764.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis