Browse Element(s) Details


OsAffx.31661.2.S1_at

Description tigr:9634.m03405
TID=OsAffx.31661.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g359508/11hypothetical protein
LOC_Os04g593001/11hypothetical protein
LOC_Os12g093901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g35930OsAffx.15764.1.S1_at9/116+20959709..20960822MIP family channel proteins containing protein
LOC_Os06g35940OsAffx.15765.1.S1_at10/116+20970972..20973161FLOWERING LOCUS T protein, putative
LOC_Os06g35950OsAffx.31661.2.S1_at8/116+20981677..20982251hypothetical protein
LOC_Os06g35960Os.10570.1.S1_at11/116+20995275..20997768HSF-type DNA-binding domain containing protein, expressed
LOC_Os06g35960OsAffx.5024.1.S1_at5/116+20995275..20997768HSF-type DNA-binding domain containing protein, expressed
LOC_Os06g35970Os.11445.1.S1_at11/116+21005769..21007163meiosis 5, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009821biological_processalkaloid biosynthesis
GO:0016844molecular_functionstrictosidine synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31661.2.S1_at--78--3411Chr06:20982024..20982048 (25 bp)
CAGCAGCACGTACCGACAGCAGCAG
LOC_Os06g35950
OsAffx.31661.2.S1_at--482--2151Chr06:20981947..20982033 (25 bp)
ACAGCAGCAGCACTTAATCGTGTGC
LOC_Os06g35950
OsAffx.31661.2.S1_at--881--5053Chr12:4922512..4922607 (24 bp)
GCAGCAGCACTTAATCGTGTGCCAT
LOC_Os12g09390
OsAffx.31661.2.S1_at--38--1511Chr06:20981942..20982028 (25 bp)
AGCAGCACTTAATCGTGTGCCATTG
LOC_Os06g35950
OsAffx.31661.2.S1_at--220--5051Chr06:20981941..20982027 (25 bp)
GCAGCACTTAATCGTGTGCCATTGC
LOC_Os06g35950
OsAffx.31661.2.S1_at--966--1491NONE
AGCACTTAATCGTGTGCCATTGCCA
NONE
OsAffx.31661.2.S1_at--654--5111NONE
GCACTTAATCGTGTGCCATTGCCAC
NONE
OsAffx.31661.2.S1_at--365--2051NONE
ACTTAATCGTGTGCCATTGCCACGC
NONE
OsAffx.31661.2.S1_at--600--10491Chr06:20981934..20981958 (25 bp)
TTAATCGTGTGCCATTGCCACGCTC
LOC_Os06g35950
OsAffx.31661.2.S1_at--765--3051Chr06:20981932..20981956 (25 bp)
AATCGTGTGCCATTGCCACGCTCGC
LOC_Os06g35950
OsAffx.31661.2.S1_at--512--4531Chr06:20981765..20981789 (25 bp)
GCCGCCGGCCTCTTTCACTGAAGAA
LOC_Os06g35950
Target Sequence 
CAGCAGCACGTACCGACAGCAGCAGCACTTAATCGTGTGCCATTGCCACGCTCGCCCTCCGCCCGCTCCGCCGCCGCGCT
CGCCCTCCGCTTCTTTGCCCGTGGCCGCGCTCGCGCTCCACTTCTCGGCCCGCCGTCACTCCGCTGCCGCGCTCGCCCTC
TGCTATGCCACCCGCATCCGCGCGCACCGCTCCGCCTGCCGCCGGCCTCTTTCACTGAAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31661.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis