Browse Element(s) Details


Os.10570.1.S1_at

Description gb:AU165045
DB_XREF= gi:11414252
DB_XREF=AU165045
CLONE=Osia54
TID=Os.10570.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.10570 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3596011/11HSF-type DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g35940OsAffx.15765.1.S1_at10/116+20970972..20973161FLOWERING LOCUS T protein, putative
LOC_Os06g35950OsAffx.31661.2.S1_at8/116+20981677..20982251hypothetical protein
LOC_Os06g35960Os.10570.1.S1_at11/116+20995275..20997768HSF-type DNA-binding domain containing protein, expressed
LOC_Os06g35960OsAffx.5024.1.S1_at5/116+20995275..20997768HSF-type DNA-binding domain containing protein, expressed
LOC_Os06g35970Os.11445.1.S1_at11/116+21005769..21007163meiosis 5, putative, expressed
LOC_Os06g35980OsAffx.15766.1.S1_at11/116+21014462..21014761hypothetical protein
LOC_Os06g35990OsAffx.15767.1.S1_at11/116+21020840..21022689hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009408biological_processresponse to heat
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10570.1.S1_at--1121--8631Chr06:20995483..20995507 (25 bp)
TGGGATATGATGTGGCAATGGCCTC
LOC_Os06g35960
Os.10570.1.S1_at--37--6511Chr06:20995480..20995504 (25 bp)
GATATGATGTGGCAATGGCCTCTAA
LOC_Os06g35960
Os.10570.1.S1_at--291--10132Chr06:20995478..20995502 (25 bp)
TATGATGTGGCAATGGCCTCTAACT
LOC_Os06g35960
Os.10570.1.S1_at--190--711Chr06:20995477..20995501 (25 bp)
ATGATGTGGCAATGGCCTCTAACTA
LOC_Os06g35960
Os.10570.1.S1_at--1089--9411Chr06:20995408..20995432 (25 bp)
TCGGGTGAGCCCTTAATTTCATGTA
LOC_Os06g35960
Os.10570.1.S1_at--1091--3952Chr06:20995407..20995431 (25 bp)
CGGGTGAGCCCTTAATTTCATGTAA
LOC_Os06g35960
Os.10570.1.S1_at--12--7712Chr06:20995406..20995430 (25 bp)
GGGTGAGCCCTTAATTTCATGTAAG
LOC_Os06g35960
Os.10570.1.S1_at--112--7771Chr06:20995405..20995429 (25 bp)
GGTGAGCCCTTAATTTCATGTAAGC
LOC_Os06g35960
Os.10570.1.S1_at--19--6551Chr06:20995337..20995361 (25 bp)
GATTAGAACTTGAACTGGAAGTATA
LOC_Os06g35960
Os.10570.1.S1_at--313--3891Chr06:20995323..20995347 (25 bp)
CTGGAAGTATAAGTTGTCAAGAATT
LOC_Os06g35960
Os.10570.1.S1_at--940--3231Chr06:20995306..20995330 (25 bp)
CAAGAATTTGGAAATGTCATTTGGA
LOC_Os06g35960
Target Sequence 
TGGGATATGATGTGGCAATGGCCTCTAACTATTGCTGTTGTGTACATAAGCATATGAATGCATGATTTGTAATGGTCGGG
TGAGCCCTTAATTTCATGTAAGCNNCTTANATTGCAGTGTTAAAGAGTTTGGTAATGGAATGACATGATTAGAACTTGAA
CTGGAAGTATAAGTTGTCAAGAATTTGGAAATGTCATTTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10570.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis