Browse Element(s) Details


OsAffx.15765.1.S1_at

Description tigr:9634.m03404
TID=OsAffx.15765.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=flowering locus t protein. (mouse-ear cress
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3594010/11FLOWERING LOCUS T protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g35910Os.18861.1.S1_a_at11/116+20945147..20951719zinc finger family protein, putative, expressed
LOC_Os06g35910OsAffx.27957.1.S1_at11/116+20945147..20951719zinc finger family protein, putative, expressed
LOC_Os06g35920OsAffx.15763.1.S1_at10/116+20952443..20953274hypothetical protein
LOC_Os06g35930OsAffx.15764.1.S1_at9/116+20959709..20960822MIP family channel proteins containing protein
LOC_Os06g35940OsAffx.15765.1.S1_at10/116+20970972..20973161FLOWERING LOCUS T protein, putative
LOC_Os06g35950OsAffx.31661.2.S1_at8/116+20981677..20982251hypothetical protein
LOC_Os06g35960Os.10570.1.S1_at11/116+20995275..20997768HSF-type DNA-binding domain containing protein, expressed
LOC_Os06g35960OsAffx.5024.1.S1_at5/116+20995275..20997768HSF-type DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009744biological_processresponse to sucrose stimulus
GO:0009910biological_processnegative regulation of flower development
GO:0009911biological_processpositive regulation of flower development
GO:0005515molecular_functionprotein binding
GO:0008429molecular_functionphosphatidylethanolamine binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15765.1.S1_at--465--2391Chr06:20973078..20973102 (25 bp)
AAACTCAGTGCCTCTAACTGTGATG
LOC_Os06g35940
OsAffx.15765.1.S1_at--141--9271Chr06:20973014..20973038 (25 bp)
TCCTCGGCAGTCTCGATGAAACCTA
LOC_Os06g35940
OsAffx.15765.1.S1_at--638--8831Chr06:20972970..20972994 (25 bp)
TGATTTTCGATTTGCCTATACCCTA
LOC_Os06g35940
OsAffx.15765.1.S1_at--568--3691Chr06:20972579..20972979 (25 bp)
CTATACCCTAGTTATGGTGGATCCT
LOC_Os06g35940
OsAffx.15765.1.S1_at--356--8611Chr06:20972418..20972442 (25 bp)
TGGTGACTGATATCCCATCATCGAC
LOC_Os06g35940
OsAffx.15765.1.S1_at--66--1551NONE
AGCTTTGGGCGGGAGATCGTAACAT
NONE
OsAffx.15765.1.S1_at--590--7031Chr06:20971163..20971187 (25 bp)
GTAACATACGAAAGCCCAAGCCCCA
LOC_Os06g35940
OsAffx.15765.1.S1_at--125--591Chr06:20971130..20971154 (25 bp)
ATCCACCGCATCGTGATGGTGTTGT
LOC_Os06g35940
OsAffx.15765.1.S1_at--506--8771Chr06:20971108..20971132 (25 bp)
TGTATCAGCAGCTTGGGCGCGGCAC
LOC_Os06g35940
OsAffx.15765.1.S1_at--248--8811Chr06:20971081..20971105 (25 bp)
TGTTCGCGCCGCAGGTGCGTCAGAA
LOC_Os06g35940
OsAffx.15765.1.S1_at--670--7111Chr06:20971063..20971087 (25 bp)
GTCAGAACTTCAACCTGCGCAGCTT
LOC_Os06g35940
Target Sequence 
AAACTCAGTGCCTCTAACTGTGATGTATGATGGGAGGCCTGTGTTTAATGGCAAGGAGTTCCGTTCCTCGGCAGTCTCGA
TGAAACCTAGAGTTGAGATTGGTGGCGATGATTTTCGATTTGCCTATACCCTAGTTATGGTGGATCCTGATGCTCCTAAT
CCCAGCAACCCAACCTTGAGGGAATACCTGCACTGGATGGTGACTGATATCCCATCATCGACGGACGATAGCTTTGGGCG
GGAGATCGTAACATACGAAAGCCCAAGCCCCACCATGGGCATCCACCGCATCGTGATGGTGTTGTATCAGCAGCTTGGGC
GCGGCACGGTGTTCGCGCCGCAGGTGCGTCAGAACTTCAACCTGCGCAGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15765.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis